miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 49398 0.7 0.348058
Target:  5'- cCGcCGUcgGCCACGgcGGCCgCGGCG-GCg -3'
miRNA:   3'- -GC-GCG--CGGUGCuaCCGGgGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 49599 0.69 0.441058
Target:  5'- uCGCGaucgGCgACGGcgGGCgCCGGCgGCGCc -3'
miRNA:   3'- -GCGCg---CGgUGCUa-CCGgGGCCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 50431 0.71 0.327103
Target:  5'- cCGCGgugGCCACGAucUGGCaCCCGuGC-CGCa -3'
miRNA:   3'- -GCGCg--CGGUGCU--ACCG-GGGC-CGcGCG- -5'
11042 3' -65 NC_002794.1 + 50581 0.67 0.546605
Target:  5'- gCGUGCGCgGCGGcUGGgUggCCGGCGC-Cg -3'
miRNA:   3'- -GCGCGCGgUGCU-ACCgG--GGCCGCGcG- -5'
11042 3' -65 NC_002794.1 + 52762 0.69 0.432776
Target:  5'- -cCGCGCCGC---GGCCCgGGC-CGCg -3'
miRNA:   3'- gcGCGCGGUGcuaCCGGGgCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 53246 0.68 0.475053
Target:  5'- gGCcCGCCGCGccGGCgUCGcCGCGCg -3'
miRNA:   3'- gCGcGCGGUGCuaCCGgGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 53314 0.68 0.483756
Target:  5'- gGCcgGCGCCGCGAgaucGGCUcgaaccgcaccuCCGGCGCcCa -3'
miRNA:   3'- gCG--CGCGGUGCUa---CCGG------------GGCCGCGcG- -5'
11042 3' -65 NC_002794.1 + 55025 0.7 0.347345
Target:  5'- cCGCGcCGCCGCGAgcacGGCguucaccgagaaaUCCaGCGCGCc -3'
miRNA:   3'- -GCGC-GCGGUGCUa---CCG-------------GGGcCGCGCG- -5'
11042 3' -65 NC_002794.1 + 55641 0.67 0.546605
Target:  5'- aCGCGgGCCggcagGCGca-GCCCCgacauGGUGCGCg -3'
miRNA:   3'- -GCGCgCGG-----UGCuacCGGGG-----CCGCGCG- -5'
11042 3' -65 NC_002794.1 + 55805 0.68 0.449429
Target:  5'- gCGCaGCGCCg----GGCgCgGGCGCGCg -3'
miRNA:   3'- -GCG-CGCGGugcuaCCGgGgCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 55878 0.67 0.546605
Target:  5'- uGCGCGCCcagugcACGAucaUGGCgUUGGUGCa- -3'
miRNA:   3'- gCGCGCGG------UGCU---ACCGgGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 56105 0.68 0.491654
Target:  5'- uGCGUGCUGCGcUGGCCCgucaugaCGGUGaacuGCa -3'
miRNA:   3'- gCGCGCGGUGCuACCGGG-------GCCGCg---CG- -5'
11042 3' -65 NC_002794.1 + 56153 0.76 0.163975
Target:  5'- gGCGUGCCgcaGCGGcagcGGCCCCGGUGCa- -3'
miRNA:   3'- gCGCGCGG---UGCUa---CCGGGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 56302 0.72 0.26934
Target:  5'- gCGCGCGCgguCGCGGUcgcuggcGGCCguggCCGGCGaCGCg -3'
miRNA:   3'- -GCGCGCG---GUGCUA-------CCGG----GGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 56472 0.68 0.461294
Target:  5'- uGCGCGCCuucgaaACGAggccggaaucgacuaUuaaaGGCCCCGcGgGCGCu -3'
miRNA:   3'- gCGCGCGG------UGCU---------------A----CCGGGGC-CgCGCG- -5'
11042 3' -65 NC_002794.1 + 56904 0.7 0.362552
Target:  5'- cCGCGCgugGCCACGGgcgccgGGCUgCCGGCcuCGCa -3'
miRNA:   3'- -GCGCG---CGGUGCUa-----CCGG-GGCCGc-GCG- -5'
11042 3' -65 NC_002794.1 + 57408 0.69 0.408487
Target:  5'- gGCGC-CCGCG-UGGCC--GGCGUGCu -3'
miRNA:   3'- gCGCGcGGUGCuACCGGggCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 58038 0.76 0.160181
Target:  5'- cCGcCGCGCCGCccguccccgucGgcGGCCCCGGCG-GCg -3'
miRNA:   3'- -GC-GCGCGGUG-----------CuaCCGGGGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 58448 0.68 0.501386
Target:  5'- aCGCuGCGCCugGcc-GCgCUGGCGCuGCa -3'
miRNA:   3'- -GCG-CGCGGugCuacCGgGGCCGCG-CG- -5'
11042 3' -65 NC_002794.1 + 58512 0.68 0.466429
Target:  5'- aCGUGCucguCCACGGgcacgccgaGGCCUucgccgCGGCGCGCg -3'
miRNA:   3'- -GCGCGc---GGUGCUa--------CCGGG------GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.