miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 195484 0.68 0.483756
Target:  5'- uCGCcCGCCGCGcgGccuaaauaagccGCCCCGGCacaCGCc -3'
miRNA:   3'- -GCGcGCGGUGCuaC------------CGGGGCCGc--GCG- -5'
11042 3' -65 NC_002794.1 + 195110 0.7 0.348058
Target:  5'- aCG-GCGUCuCG-UGcGCCCgCGGCGCGCg -3'
miRNA:   3'- -GCgCGCGGuGCuAC-CGGG-GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 194520 0.69 0.400581
Target:  5'- cCGCGUGCCGCc--GGCCCa-GCaGCGCc -3'
miRNA:   3'- -GCGCGCGGUGcuaCCGGGgcCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 194153 0.74 0.226113
Target:  5'- aGCGC-CCGCGA--GCCcugCCGGCGCGCc -3'
miRNA:   3'- gCGCGcGGUGCUacCGG---GGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 193615 0.68 0.451958
Target:  5'- cCGCgGCGCCGUGGccaucuuuuuuuuUuucguuuccccggucGGCUCCGGCGCGCc -3'
miRNA:   3'- -GCG-CGCGGUGCU-------------A---------------CCGGGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 192658 0.66 0.611824
Target:  5'- cCGCGCGCUcgcGCGAcucgaaGCgCCGGC-CGCc -3'
miRNA:   3'- -GCGCGCGG---UGCUac----CGgGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 192401 0.73 0.238586
Target:  5'- cCGCGCcgggguagucgaaacGCCGCGAcgGGUCCgCGGCcgGCGCg -3'
miRNA:   3'- -GCGCG---------------CGGUGCUa-CCGGG-GCCG--CGCG- -5'
11042 3' -65 NC_002794.1 + 190734 0.66 0.592106
Target:  5'- aCGCaGCGCCcgccgccgucucgACGggGGCggCGGCcGCGCg -3'
miRNA:   3'- -GCG-CGCGG-------------UGCuaCCGggGCCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 190672 0.7 0.367723
Target:  5'- cCGcCGCGCCGCcg-GGUcuccacgcacaccuCCCGGCGCaGCg -3'
miRNA:   3'- -GC-GCGCGGUGcuaCCG--------------GGGCCGCG-CG- -5'
11042 3' -65 NC_002794.1 + 190059 0.68 0.448588
Target:  5'- uCGUGuCGCCGCGGUGGaacaccagggcguUCUCGuCGCGCa -3'
miRNA:   3'- -GCGC-GCGGUGCUACC-------------GGGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 189819 0.79 0.093224
Target:  5'- gGCGCGCCACGAUcaaccgccacagcggGGUCUCGGC-CGCg -3'
miRNA:   3'- gCGCGCGGUGCUA---------------CCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 188333 0.66 0.565066
Target:  5'- uCGC-CGCCGcCGgcGGCgCCGuCGCGCc -3'
miRNA:   3'- -GCGcGCGGU-GCuaCCGgGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 188291 0.67 0.528341
Target:  5'- aGgGCGCCGCGcgccGGaCCCGGCcCGUc -3'
miRNA:   3'- gCgCGCGGUGCua--CCgGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 187909 0.67 0.546605
Target:  5'- cCGCuCGCC-CGccgGGCCCCGcCGCGa -3'
miRNA:   3'- -GCGcGCGGuGCua-CCGGGGCcGCGCg -5'
11042 3' -65 NC_002794.1 + 187843 0.71 0.340265
Target:  5'- gGCGCGCCGag--GGCUCUGcccagccGCGCGCg -3'
miRNA:   3'- gCGCGCGGUgcuaCCGGGGC-------CGCGCG- -5'
11042 3' -65 NC_002794.1 + 187587 0.66 0.574359
Target:  5'- gGCGCgGCCGCcGUcGCgacgCCCGGCGuCGCc -3'
miRNA:   3'- gCGCG-CGGUGcUAcCG----GGGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 187445 0.68 0.449429
Target:  5'- cCGCGCcgucugccGCCGCuc-GGCgucgCUCGGCGCGCg -3'
miRNA:   3'- -GCGCG--------CGGUGcuaCCG----GGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 186940 0.72 0.288042
Target:  5'- cCGC-CGCCACGGcccccgggccgcUGGCCgCCGccuccagcaGCGCGCg -3'
miRNA:   3'- -GCGcGCGGUGCU------------ACCGG-GGC---------CGCGCG- -5'
11042 3' -65 NC_002794.1 + 186480 0.72 0.294289
Target:  5'- -uCGCuCCugGAgGGCCCggCGGCGCGCc -3'
miRNA:   3'- gcGCGcGGugCUaCCGGG--GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 186293 0.71 0.313661
Target:  5'- cCGCG-GCCAggcggcCGGUcGCCgCGGCGCGCu -3'
miRNA:   3'- -GCGCgCGGU------GCUAcCGGgGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.