miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 185556 0.69 0.400581
Target:  5'- cCGCGCGCCcCGcccuGCCgCGGCaggGCGCg -3'
miRNA:   3'- -GCGCGCGGuGCuac-CGGgGCCG---CGCG- -5'
11042 3' -65 NC_002794.1 + 185459 0.66 0.564139
Target:  5'- cCGCGacaaaCGCCGCGGgcggcGGCCgCGGCGaggggacCGCc -3'
miRNA:   3'- -GCGC-----GCGGUGCUa----CCGGgGCCGC-------GCG- -5'
11042 3' -65 NC_002794.1 + 185352 0.69 0.416489
Target:  5'- gCGCGcCGCCGCGAgcgGGCCgaaCGcCGCGa -3'
miRNA:   3'- -GCGC-GCGGUGCUa--CCGGg--GCcGCGCg -5'
11042 3' -65 NC_002794.1 + 185176 0.71 0.340968
Target:  5'- gGCGCGgCGCGGUcGGCgCgguCGGCGCGg -3'
miRNA:   3'- gCGCGCgGUGCUA-CCGgG---GCCGCGCg -5'
11042 3' -65 NC_002794.1 + 184813 0.67 0.537446
Target:  5'- aGCaGCGUCACGG-GGCacgcgUCCGG-GCGCa -3'
miRNA:   3'- gCG-CGCGGUGCUaCCG-----GGGCCgCGCG- -5'
11042 3' -65 NC_002794.1 + 184570 0.72 0.275862
Target:  5'- aCGCGcCGCCGCGgcGGCggCGGCcacGCGCg -3'
miRNA:   3'- -GCGC-GCGGUGCuaCCGggGCCG---CGCG- -5'
11042 3' -65 NC_002794.1 + 184500 0.74 0.197336
Target:  5'- aCGCccGgGCgGCGcgGGCCCCG-CGCGCg -3'
miRNA:   3'- -GCG--CgCGgUGCuaCCGGGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 184450 0.78 0.123406
Target:  5'- aGCGCGCCGCugccgcccGcgGGCCgcgcgaaCGGCGCGCg -3'
miRNA:   3'- gCGCGCGGUG--------CuaCCGGg------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 184077 0.66 0.611824
Target:  5'- aCGCGC-CCACGGUguagcGGCagaaCGGCGaaCGCg -3'
miRNA:   3'- -GCGCGcGGUGCUA-----CCGgg--GCCGC--GCG- -5'
11042 3' -65 NC_002794.1 + 184046 0.72 0.275862
Target:  5'- aGCGCGCgGuCGcgGGCCgCGGCGaaGCg -3'
miRNA:   3'- gCGCGCGgU-GCuaCCGGgGCCGCg-CG- -5'
11042 3' -65 NC_002794.1 + 183534 0.67 0.519293
Target:  5'- uGCGCGCCcCGuccGCCCgGGgacacUGCGCg -3'
miRNA:   3'- gCGCGCGGuGCuacCGGGgCC-----GCGCG- -5'
11042 3' -65 NC_002794.1 + 183468 0.66 0.565066
Target:  5'- cCGCcCGCCGCGAguccgcGGCCCgaucccCGCGCg -3'
miRNA:   3'- -GCGcGCGGUGCUa-----CCGGGgcc---GCGCG- -5'
11042 3' -65 NC_002794.1 + 183357 0.74 0.226113
Target:  5'- aGCGCGCCG-GAccccaGGUCCCGGcCGUGCc -3'
miRNA:   3'- gCGCGCGGUgCUa----CCGGGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 183195 0.69 0.424586
Target:  5'- aCGCGcCGCCACGccGGC---GGCGCGUu -3'
miRNA:   3'- -GCGC-GCGGUGCuaCCGgggCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 182997 0.78 0.109419
Target:  5'- gGCGCuucGCCGCGGgcGCCCCGcGCGCGCc -3'
miRNA:   3'- gCGCG---CGGUGCUacCGGGGC-CGCGCG- -5'
11042 3' -65 NC_002794.1 + 182585 0.7 0.362552
Target:  5'- uGCGgGCgACGAUGGUCgCGuuguCGCGCa -3'
miRNA:   3'- gCGCgCGgUGCUACCGGgGCc---GCGCG- -5'
11042 3' -65 NC_002794.1 + 182263 0.66 0.593043
Target:  5'- aGCGCGCCGaguccCGAgcGGCCUCccaugacggGGCGgGUg -3'
miRNA:   3'- gCGCGCGGU-----GCUa-CCGGGG---------CCGCgCG- -5'
11042 3' -65 NC_002794.1 + 182209 0.71 0.340968
Target:  5'- gCGuCGCGCCACGG-GGCUCCgacggucaGGC-CGCa -3'
miRNA:   3'- -GC-GCGCGGUGCUaCCGGGG--------CCGcGCG- -5'
11042 3' -65 NC_002794.1 + 181590 0.67 0.510307
Target:  5'- uGCGgGCCGCGAccgggucGCCCCGuuGcCGCa -3'
miRNA:   3'- gCGCgCGGUGCUac-----CGGGGCcgC-GCG- -5'
11042 3' -65 NC_002794.1 + 180885 0.68 0.449429
Target:  5'- gGCGCGCC-CGGUcucGGCCgcggacUCGGC-CGCg -3'
miRNA:   3'- gCGCGCGGuGCUA---CCGG------GGCCGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.