miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 180666 0.69 0.43031
Target:  5'- gGCGUGCCGgGGaacUcgccggccgcucccGGCgCCCGGCGgGCg -3'
miRNA:   3'- gCGCGCGGUgCU---A--------------CCG-GGGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 180612 0.72 0.275862
Target:  5'- cCGCGgGCCACGAcacggcGGCCCaccCGCGCu -3'
miRNA:   3'- -GCGCgCGGUGCUa-----CCGGGgccGCGCG- -5'
11042 3' -65 NC_002794.1 + 180291 0.68 0.501386
Target:  5'- cCGCGcCGCCGCaacacGCCggCCGGCGCGa -3'
miRNA:   3'- -GCGC-GCGGUGcuac-CGG--GGCCGCGCg -5'
11042 3' -65 NC_002794.1 + 179975 0.68 0.457887
Target:  5'- aGCGgcaggaGCCaagGCGGUGGCCgcgaCGGCGgGCc -3'
miRNA:   3'- gCGCg-----CGG---UGCUACCGGg---GCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 179699 0.67 0.528341
Target:  5'- gGCG-GCgACGGUGGCgacgCCGGCG-GCu -3'
miRNA:   3'- gCGCgCGgUGCUACCGg---GGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 176528 0.67 0.519293
Target:  5'- aGCGUGUCGCaucGGUCCCuuugGGCGaCGCg -3'
miRNA:   3'- gCGCGCGGUGcuaCCGGGG----CCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 157662 0.66 0.583686
Target:  5'- cCGaCGCGCUgGCGGcuugGGCCgCuUGGCGUGCa -3'
miRNA:   3'- -GC-GCGCGG-UGCUa---CCGG-G-GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 156403 0.7 0.377459
Target:  5'- gGCcgGCGCCGCGGccgcGGCCacggCCGGCGgGUg -3'
miRNA:   3'- gCG--CGCGGUGCUa---CCGG----GGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 154341 0.66 0.602424
Target:  5'- cCGgGUGCCGCGGccGaGCUCCcGCGCGg -3'
miRNA:   3'- -GCgCGCGGUGCUa-C-CGGGGcCGCGCg -5'
11042 3' -65 NC_002794.1 + 153651 0.7 0.36921
Target:  5'- aGCGCuuacGCCGCGuccGGCCgCCGGUugugaggcucgacGCGCg -3'
miRNA:   3'- gCGCG----CGGUGCua-CCGG-GGCCG-------------CGCG- -5'
11042 3' -65 NC_002794.1 + 152570 0.68 0.466429
Target:  5'- gGCGCuucaccGCCGCGgcGGCCgCCacgucccugcGGCGCGg -3'
miRNA:   3'- gCGCG------CGGUGCuaCCGG-GG----------CCGCGCg -5'
11042 3' -65 NC_002794.1 + 151949 0.74 0.197336
Target:  5'- cCGCcCGCgACGAcGGCCCCGG-GUGCu -3'
miRNA:   3'- -GCGcGCGgUGCUaCCGGGGCCgCGCG- -5'
11042 3' -65 NC_002794.1 + 151712 0.68 0.457038
Target:  5'- aGCGCGCCagucgcgcgaaggACGucgucGGCCgCCGGUcgccucGCGCg -3'
miRNA:   3'- gCGCGCGG-------------UGCua---CCGG-GGCCG------CGCG- -5'
11042 3' -65 NC_002794.1 + 151589 0.68 0.465571
Target:  5'- gCGCGCGCCGCcgccGcgGGCCCgCGGUuccucggcugacgGCcgGCa -3'
miRNA:   3'- -GCGCGCGGUG----CuaCCGGG-GCCG-------------CG--CG- -5'
11042 3' -65 NC_002794.1 + 151506 0.69 0.424586
Target:  5'- gCGUGCGCUcgguucgGGUGG-CCUGGUGCGCc -3'
miRNA:   3'- -GCGCGCGGug-----CUACCgGGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 150542 0.67 0.546605
Target:  5'- gGCcgGCGCCAUGGccGUCUCGGCGCu- -3'
miRNA:   3'- gCG--CGCGGUGCUacCGGGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 150291 0.67 0.537446
Target:  5'- -aCGCGCCGgugUGGUGGCagcggaucaCCGGcCGCGUc -3'
miRNA:   3'- gcGCGCGGU---GCUACCGg--------GGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 150002 0.71 0.327103
Target:  5'- cCGCGCuGCUACGAcGGCccgcuccgagaCCCGGC-CGCc -3'
miRNA:   3'- -GCGCG-CGGUGCUaCCG-----------GGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 149683 0.73 0.241256
Target:  5'- uCGCGCucgacugGCCGCGggGGCCgCCuGGCGgGUg -3'
miRNA:   3'- -GCGCG-------CGGUGCuaCCGG-GG-CCGCgCG- -5'
11042 3' -65 NC_002794.1 + 148212 0.7 0.392774
Target:  5'- gCGCGCGCU-CGAUcGGUCuCCGGUcgGCGUc -3'
miRNA:   3'- -GCGCGCGGuGCUA-CCGG-GGCCG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.