Results 61 - 80 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11042 | 3' | -65 | NC_002794.1 | + | 123126 | 0.66 | 0.602424 |
Target: 5'- uCGaGCGCCACGu---CCCCGucGUGCGCu -3' miRNA: 3'- -GCgCGCGGUGCuaccGGGGC--CGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 95087 | 0.66 | 0.602424 |
Target: 5'- --aGUGCUACGAggagcUGGCCgCGGUGCcCa -3' miRNA: 3'- gcgCGCGGUGCU-----ACCGGgGCCGCGcG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 98966 | 0.66 | 0.583686 |
Target: 5'- uGgGCGCCGuCGGcggcgccgUGGCCUCGGUGgucgGCg -3' miRNA: 3'- gCgCGCGGU-GCU--------ACCGGGGCCGCg---CG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 89980 | 0.66 | 0.583686 |
Target: 5'- gGUGCGCCgGCGuucga-CCGGUGCGCa -3' miRNA: 3'- gCGCGCGG-UGCuaccggGGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 91720 | 0.66 | 0.583686 |
Target: 5'- aCGCGCaucGCCuucuucuCGgcGGCCaacaaggugCCGGCGgGCg -3' miRNA: 3'- -GCGCG---CGGu------GCuaCCGG---------GGCCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 64284 | 0.66 | 0.583686 |
Target: 5'- gGCGCuCUACGcccaccgcGGCCCCGuCGUGCu -3' miRNA: 3'- gCGCGcGGUGCua------CCGGGGCcGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 129231 | 0.66 | 0.582752 |
Target: 5'- gGCGCGa-ACGGgcGGCUCCGGCggacucgggucgaGCGCc -3' miRNA: 3'- gCGCGCggUGCUa-CCGGGGCCG-------------CGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 140004 | 0.66 | 0.574359 |
Target: 5'- gGUGCggguggagGCCGCGGaGGCCgCGGCcccCGCg -3' miRNA: 3'- gCGCG--------CGGUGCUaCCGGgGCCGc--GCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 187587 | 0.66 | 0.574359 |
Target: 5'- gGCGCgGCCGCcGUcGCgacgCCCGGCGuCGCc -3' miRNA: 3'- gCGCG-CGGUGcUAcCG----GGGCCGC-GCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 91007 | 0.66 | 0.582752 |
Target: 5'- aGCGgGCCGacaccgacuucacCGAgcucugggcGGCCCUcgggguggacggGGCGCGCg -3' miRNA: 3'- gCGCgCGGU-------------GCUa--------CCGGGG------------CCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 137415 | 0.66 | 0.583686 |
Target: 5'- cCGCGgaCGCCGCGGagaccGCgCCGGCGCu- -3' miRNA: 3'- -GCGC--GCGGUGCUac---CGgGGCCGCGcg -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 11773 | 0.66 | 0.592106 |
Target: 5'- uGCGacgcucacgggauCGCCGCGGUGuCCgUGGCGcCGCc -3' miRNA: 3'- gCGC-------------GCGGUGCUACcGGgGCCGC-GCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 12776 | 0.66 | 0.599607 |
Target: 5'- cCGcCGCGCUucggcgagaacgugACGAUcGGCCCgGGgccCGUGCu -3' miRNA: 3'- -GC-GCGCGG--------------UGCUA-CCGGGgCC---GCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 111114 | 0.66 | 0.593043 |
Target: 5'- cCGUG-GCCGuCGAcGGCgCCGGCG-GCc -3' miRNA: 3'- -GCGCgCGGU-GCUaCCGgGGCCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 141596 | 0.66 | 0.593043 |
Target: 5'- cCGCGuCGCCggGCGGcucGGCgaCCGGCuCGCg -3' miRNA: 3'- -GCGC-GCGG--UGCUa--CCGg-GGCCGcGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 108151 | 0.66 | 0.593043 |
Target: 5'- uCGC-CGCCGgGA--GCgCCGGCGCGa -3' miRNA: 3'- -GCGcGCGGUgCUacCGgGGCCGCGCg -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 182263 | 0.66 | 0.593043 |
Target: 5'- aGCGCGCCGaguccCGAgcGGCCUCccaugacggGGCGgGUg -3' miRNA: 3'- gCGCGCGGU-----GCUa-CCGGGG---------CCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 94208 | 0.66 | 0.593043 |
Target: 5'- uGCGCuuGUgACGGUGGCggcgaCgGGCGgGCg -3' miRNA: 3'- gCGCG--CGgUGCUACCGg----GgCCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 190734 | 0.66 | 0.592106 |
Target: 5'- aCGCaGCGCCcgccgccgucucgACGggGGCggCGGCcGCGCg -3' miRNA: 3'- -GCG-CGCGG-------------UGCuaCCGggGCCG-CGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 157662 | 0.66 | 0.583686 |
Target: 5'- cCGaCGCGCUgGCGGcuugGGCCgCuUGGCGUGCa -3' miRNA: 3'- -GC-GCGCGG-UGCUa---CCGG-G-GCCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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