miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 18079 0.66 0.574359
Target:  5'- uGUGCGUguCGGUGGCgCagaaGGCGCcCa -3'
miRNA:   3'- gCGCGCGguGCUACCGgGg---CCGCGcG- -5'
11042 3' -65 NC_002794.1 + 139624 0.66 0.574359
Target:  5'- --aGCGCgACGGUGgcgaaGCCCaCGGUGCaGCu -3'
miRNA:   3'- gcgCGCGgUGCUAC-----CGGG-GCCGCG-CG- -5'
11042 3' -65 NC_002794.1 + 92507 0.66 0.574359
Target:  5'- gGCG-GCCA---UGGCCCUGGUguccgagguGCGCa -3'
miRNA:   3'- gCGCgCGGUgcuACCGGGGCCG---------CGCG- -5'
11042 3' -65 NC_002794.1 + 58564 0.66 0.573428
Target:  5'- gGCGCGCUgcGCGAacGCCUacuuccaccagcgCGGCGgGCu -3'
miRNA:   3'- gCGCGCGG--UGCUacCGGG-------------GCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 23605 0.66 0.565066
Target:  5'- cCGCcgaccCGaCCcCGcgGGCgCCCGGaCGCGCg -3'
miRNA:   3'- -GCGc----GC-GGuGCuaCCG-GGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 65238 0.66 0.571567
Target:  5'- gGCGguCGCCGCGgcGGCgaUCCGGCcucgccgagcggcgGCGCc -3'
miRNA:   3'- gCGC--GCGGUGCuaCCG--GGGCCG--------------CGCG- -5'
11042 3' -65 NC_002794.1 + 183468 0.66 0.565066
Target:  5'- cCGCcCGCCGCGAguccgcGGCCCgaucccCGCGCg -3'
miRNA:   3'- -GCGcGCGGUGCUa-----CCGGGgcc---GCGCG- -5'
11042 3' -65 NC_002794.1 + 91007 0.66 0.582752
Target:  5'- aGCGgGCCGacaccgacuucacCGAgcucugggcGGCCCUcgggguggacggGGCGCGCg -3'
miRNA:   3'- gCGCgCGGU-------------GCUa--------CCGGGG------------CCGCGCG- -5'
11042 3' -65 NC_002794.1 + 187587 0.66 0.574359
Target:  5'- gGCGCgGCCGCcGUcGCgacgCCCGGCGuCGCc -3'
miRNA:   3'- gCGCG-CGGUGcUAcCG----GGGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 140004 0.66 0.574359
Target:  5'- gGUGCggguggagGCCGCGGaGGCCgCGGCcccCGCg -3'
miRNA:   3'- gCGCG--------CGGUGCUaCCGGgGCCGc--GCG- -5'
11042 3' -65 NC_002794.1 + 94208 0.66 0.593043
Target:  5'- uGCGCuuGUgACGGUGGCggcgaCgGGCGgGCg -3'
miRNA:   3'- gCGCG--CGgUGCUACCGg----GgCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 190734 0.66 0.592106
Target:  5'- aCGCaGCGCCcgccgccgucucgACGggGGCggCGGCcGCGCg -3'
miRNA:   3'- -GCG-CGCGG-------------UGCuaCCGggGCCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 157662 0.66 0.583686
Target:  5'- cCGaCGCGCUgGCGGcuugGGCCgCuUGGCGUGCa -3'
miRNA:   3'- -GC-GCGCGG-UGCUa---CCGG-G-GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 11773 0.66 0.592106
Target:  5'- uGCGacgcucacgggauCGCCGCGGUGuCCgUGGCGcCGCc -3'
miRNA:   3'- gCGC-------------GCGGUGCUACcGGgGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 137415 0.66 0.583686
Target:  5'- cCGCGgaCGCCGCGGagaccGCgCCGGCGCu- -3'
miRNA:   3'- -GCGC--GCGGUGCUac---CGgGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 98966 0.66 0.583686
Target:  5'- uGgGCGCCGuCGGcggcgccgUGGCCUCGGUGgucgGCg -3'
miRNA:   3'- gCgCGCGGU-GCU--------ACCGGGGCCGCg---CG- -5'
11042 3' -65 NC_002794.1 + 89980 0.66 0.583686
Target:  5'- gGUGCGCCgGCGuucga-CCGGUGCGCa -3'
miRNA:   3'- gCGCGCGG-UGCuaccggGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 91720 0.66 0.583686
Target:  5'- aCGCGCaucGCCuucuucuCGgcGGCCaacaaggugCCGGCGgGCg -3'
miRNA:   3'- -GCGCG---CGGu------GCuaCCGG---------GGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 64284 0.66 0.583686
Target:  5'- gGCGCuCUACGcccaccgcGGCCCCGuCGUGCu -3'
miRNA:   3'- gCGCGcGGUGCua------CCGGGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 129231 0.66 0.582752
Target:  5'- gGCGCGa-ACGGgcGGCUCCGGCggacucgggucgaGCGCc -3'
miRNA:   3'- gCGCGCggUGCUa-CCGGGGCCG-------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.