miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 5' -55.5 NC_002794.1 + 179211 0.66 0.945632
Target:  5'- cGGCgGCACGAcggacguggcccAGAUGCaacagGUCGGcGUCg -3'
miRNA:   3'- uUCG-CGUGCU------------UCUGCGa----CAGCCaCAG- -5'
11042 5' -55.5 NC_002794.1 + 105872 0.66 0.945632
Target:  5'- cGGCGC-CGAGGACGUgGggGGUGg- -3'
miRNA:   3'- uUCGCGuGCUUCUGCGaCagCCACag -5'
11042 5' -55.5 NC_002794.1 + 95086 0.66 0.941119
Target:  5'- cAGUGCuACGAGGA-GCUGgccgCGGUGcCc -3'
miRNA:   3'- uUCGCG-UGCUUCUgCGACa---GCCACaG- -5'
11042 5' -55.5 NC_002794.1 + 190037 0.66 0.936371
Target:  5'- uAGCGCACGuAG-CGCUGacUCaucGUGUCg -3'
miRNA:   3'- uUCGCGUGCuUCuGCGAC--AGc--CACAG- -5'
11042 5' -55.5 NC_002794.1 + 136077 0.66 0.931386
Target:  5'- gAAGCGCAUaaacgcgggGGAGGCGUagacGUCGGcGUCc -3'
miRNA:   3'- -UUCGCGUG---------CUUCUGCGa---CAGCCaCAG- -5'
11042 5' -55.5 NC_002794.1 + 145363 0.66 0.931386
Target:  5'- gGGGUGUggucaccggGCGGAGACGCUccgcUCGGUGg- -3'
miRNA:   3'- -UUCGCG---------UGCUUCUGCGAc---AGCCACag -5'
11042 5' -55.5 NC_002794.1 + 147582 0.66 0.931386
Target:  5'- cGAGCgGCACaccGAGGCGCUcgCGGUGUg -3'
miRNA:   3'- -UUCG-CGUGc--UUCUGCGAcaGCCACAg -5'
11042 5' -55.5 NC_002794.1 + 54491 0.66 0.930874
Target:  5'- uGGCgGCuuugaaccaaccgACGuuGACGUUGUCGGUcGUCg -3'
miRNA:   3'- uUCG-CG-------------UGCuuCUGCGACAGCCA-CAG- -5'
11042 5' -55.5 NC_002794.1 + 54248 0.66 0.926162
Target:  5'- cGAGCGCGCGGuccacGGCGCcgcGUCGGg--- -3'
miRNA:   3'- -UUCGCGUGCUu----CUGCGa--CAGCCacag -5'
11042 5' -55.5 NC_002794.1 + 30858 0.66 0.926162
Target:  5'- -cGCGUACcagguGAAGAaGCgGUCGGUGUa -3'
miRNA:   3'- uuCGCGUG-----CUUCUgCGaCAGCCACAg -5'
11042 5' -55.5 NC_002794.1 + 140554 0.67 0.920701
Target:  5'- cGAGgGaCGCGAcGAC-CUG-CGGUGUCa -3'
miRNA:   3'- -UUCgC-GUGCUuCUGcGACaGCCACAG- -5'
11042 5' -55.5 NC_002794.1 + 96922 0.67 0.896492
Target:  5'- gAGGCGCcgGCGAcAGcACGCcGUCGGaGUCu -3'
miRNA:   3'- -UUCGCG--UGCU-UC-UGCGaCAGCCaCAG- -5'
11042 5' -55.5 NC_002794.1 + 185175 0.67 0.889859
Target:  5'- cGGCGCggcGCGGucGGCGCgGUCGGcgcgGUCa -3'
miRNA:   3'- uUCGCG---UGCUu-CUGCGaCAGCCa---CAG- -5'
11042 5' -55.5 NC_002794.1 + 19525 0.68 0.883001
Target:  5'- gGAGCGC-CGGcgcGGCGCggcccGcCGGUGUCg -3'
miRNA:   3'- -UUCGCGuGCUu--CUGCGa----CaGCCACAG- -5'
11042 5' -55.5 NC_002794.1 + 107001 0.68 0.868624
Target:  5'- cGGCGCugGccGACGCga-CGGUGcUCa -3'
miRNA:   3'- uUCGCGugCuuCUGCGacaGCCAC-AG- -5'
11042 5' -55.5 NC_002794.1 + 180374 0.68 0.861115
Target:  5'- ---gGCGCGAGGACGCUGcCGGc--- -3'
miRNA:   3'- uucgCGUGCUUCUGCGACaGCCacag -5'
11042 5' -55.5 NC_002794.1 + 91670 0.68 0.856511
Target:  5'- cGGCGCACGuGGgcGCGCUGgucuucagcggcaacUCGGUGcUCu -3'
miRNA:   3'- uUCGCGUGCuUC--UGCGAC---------------AGCCAC-AG- -5'
11042 5' -55.5 NC_002794.1 + 151719 0.68 0.853401
Target:  5'- cAGuCGCGCGAAgGACGUcGUCGGccgccgGUCg -3'
miRNA:   3'- uUC-GCGUGCUU-CUGCGaCAGCCa-----CAG- -5'
11042 5' -55.5 NC_002794.1 + 34745 0.69 0.829087
Target:  5'- aGAGCGCGCGAcGGCGCgGUgGGa--- -3'
miRNA:   3'- -UUCGCGUGCUuCUGCGaCAgCCacag -5'
11042 5' -55.5 NC_002794.1 + 14640 0.69 0.803169
Target:  5'- -cGgGCACGGAGACGCcGgcgccgCGGcGUCg -3'
miRNA:   3'- uuCgCGUGCUUCUGCGaCa-----GCCaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.