miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 3' -55.7 NC_002794.1 + 140186 0.66 0.957299
Target:  5'- gUCGGcGACGGCGUcgucgaGGGGCGacccgGGCc -3'
miRNA:   3'- aAGCC-UUGCCGCAag----CCUUGCa----CCGc -5'
11043 3' -55.7 NC_002794.1 + 143090 0.66 0.956931
Target:  5'- -gUGGAgguugcGCGGCGUguuccagccccgcUCGGc-CGUGGCGc -3'
miRNA:   3'- aaGCCU------UGCCGCA-------------AGCCuuGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 102644 0.66 0.953515
Target:  5'- -cCGGcuGGCGGCGcgcUCGGAggagcugccgaGCGUgGGCGa -3'
miRNA:   3'- aaGCC--UUGCCGCa--AGCCU-----------UGCA-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 184475 0.66 0.953125
Target:  5'- -gCGcGAACGGCGcgCGGGgccccggACGcccgGGCGg -3'
miRNA:   3'- aaGC-CUUGCCGCaaGCCU-------UGCa---CCGC- -5'
11043 3' -55.7 NC_002794.1 + 148130 0.66 0.949512
Target:  5'- gUCGGGcGCGGgGccgcCGGGGCGagGGCGg -3'
miRNA:   3'- aAGCCU-UGCCgCaa--GCCUUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 48628 0.66 0.949512
Target:  5'- -gCGGAGCGGCcgUCGGGGCcc-GCGa -3'
miRNA:   3'- aaGCCUUGCCGcaAGCCUUGcacCGC- -5'
11043 3' -55.7 NC_002794.1 + 102152 0.66 0.945285
Target:  5'- cUUCGG--CGGCGUgcgcgcCGGGGCcaucGUGGCGc -3'
miRNA:   3'- -AAGCCuuGCCGCAa-----GCCUUG----CACCGC- -5'
11043 3' -55.7 NC_002794.1 + 103207 0.66 0.945285
Target:  5'- gUCGaucuuGACGGUGgaCGGGACGaGGCGc -3'
miRNA:   3'- aAGCc----UUGCCGCaaGCCUUGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 116924 0.66 0.94485
Target:  5'- gUCGGcucCGGCGUcgUCGGcguccccggcggcGGCGUcGGCGg -3'
miRNA:   3'- aAGCCuu-GCCGCA--AGCC-------------UUGCA-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 129846 0.66 0.940832
Target:  5'- -gCGGAGCGGaaccuccgUCGcGAACGgggGGCGc -3'
miRNA:   3'- aaGCCUUGCCgca-----AGC-CUUGCa--CCGC- -5'
11043 3' -55.7 NC_002794.1 + 182172 0.66 0.936152
Target:  5'- gUCGGAGCGGCuGUaccauaaCGGGGCcucGGCGc -3'
miRNA:   3'- aAGCCUUGCCG-CAa------GCCUUGca-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 107053 0.66 0.936152
Target:  5'- gUCGGAggcggcgggcGCGGCGccgccggcaugUCGGAGCcgacgGGCGg -3'
miRNA:   3'- aAGCCU----------UGCCGCa----------AGCCUUGca---CCGC- -5'
11043 3' -55.7 NC_002794.1 + 66659 0.66 0.936152
Target:  5'- aUCGGuAACGGCGUcgUGGucAACGgccccGGCGc -3'
miRNA:   3'- aAGCC-UUGCCGCAa-GCC--UUGCa----CCGC- -5'
11043 3' -55.7 NC_002794.1 + 129334 0.66 0.936152
Target:  5'- -cCGGGGCGGCGguuucCaGAACGgGGUGa -3'
miRNA:   3'- aaGCCUUGCCGCaa---GcCUUGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 182329 0.66 0.936152
Target:  5'- gUCGGGcggGCgGGCGagCGGAcggGCG-GGCGg -3'
miRNA:   3'- aAGCCU---UG-CCGCaaGCCU---UGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 87364 0.67 0.931243
Target:  5'- -gCGGcgAGCGGCGUUCuGGGCGgcgcGGCc -3'
miRNA:   3'- aaGCC--UUGCCGCAAGcCUUGCa---CCGc -5'
11043 3' -55.7 NC_002794.1 + 179685 0.67 0.931243
Target:  5'- -gCGGcGACGGUGgcggCGGcGACGgUGGCGa -3'
miRNA:   3'- aaGCC-UUGCCGCaa--GCC-UUGC-ACCGC- -5'
11043 3' -55.7 NC_002794.1 + 111086 0.67 0.926103
Target:  5'- gUCGGcaggguCGGCGggcccggCGGGAcCGUGGCc -3'
miRNA:   3'- aAGCCuu----GCCGCaa-----GCCUU-GCACCGc -5'
11043 3' -55.7 NC_002794.1 + 147212 0.67 0.920734
Target:  5'- gUCGGGcCGGgGc-CGGGGCGuUGGCGc -3'
miRNA:   3'- aAGCCUuGCCgCaaGCCUUGC-ACCGC- -5'
11043 3' -55.7 NC_002794.1 + 110516 0.67 0.920734
Target:  5'- gUCGGucgagauCGGCGUgCGGGagaACGcGGCGa -3'
miRNA:   3'- aAGCCuu-----GCCGCAaGCCU---UGCaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.