miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 3' -55.7 NC_002794.1 + 34843 0.78 0.38098
Target:  5'- -cCGGAGCgGGCG-UCGGAGCG-GGCGc -3'
miRNA:   3'- aaGCCUUG-CCGCaAGCCUUGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 89948 0.76 0.495355
Target:  5'- cUCGGGAgccgacgucgaGGCGUUCGGAcCGUGGUGc -3'
miRNA:   3'- aAGCCUUg----------CCGCAAGCCUuGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 126744 0.74 0.602828
Target:  5'- -gUGGGACGGUGguggugUCgGGAACGUGGgGg -3'
miRNA:   3'- aaGCCUUGCCGCa-----AG-CCUUGCACCgC- -5'
11043 3' -55.7 NC_002794.1 + 96894 0.73 0.62288
Target:  5'- -aCGGGGCaGGCGUcgggCGGAG-GUGGCGg -3'
miRNA:   3'- aaGCCUUG-CCGCAa---GCCUUgCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 149776 0.73 0.63292
Target:  5'- gUUGGAGCgGGCGUaCGGGugGUGcGUGg -3'
miRNA:   3'- aAGCCUUG-CCGCAaGCCUugCAC-CGC- -5'
11043 3' -55.7 NC_002794.1 + 183294 0.72 0.682956
Target:  5'- aUCGGGccCGGCGUcUGGAACG-GGCa -3'
miRNA:   3'- aAGCCUu-GCCGCAaGCCUUGCaCCGc -5'
11043 3' -55.7 NC_002794.1 + 58058 0.72 0.70176
Target:  5'- gUCGGcggccccGGCGGCGg-CGGGACG-GGCGg -3'
miRNA:   3'- aAGCC-------UUGCCGCaaGCCUUGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 51065 0.72 0.702745
Target:  5'- -gCGGcGACGGCGaccUCcGAGCGUGGCGc -3'
miRNA:   3'- aaGCC-UUGCCGCa--AGcCUUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 20531 0.72 0.712558
Target:  5'- -aCGGAcUGGCGUUCGcGACGacgGGCGa -3'
miRNA:   3'- aaGCCUuGCCGCAAGCcUUGCa--CCGC- -5'
11043 3' -55.7 NC_002794.1 + 94486 0.71 0.731977
Target:  5'- -gCGGAcGCGGCcg-CGGGcCGUGGCGg -3'
miRNA:   3'- aaGCCU-UGCCGcaaGCCUuGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 145585 0.71 0.749171
Target:  5'- -aCGGAGCGGCGgccggcucccgCGGAGuCG-GGCGc -3'
miRNA:   3'- aaGCCUUGCCGCaa---------GCCUU-GCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 115987 0.7 0.778004
Target:  5'- --gGGAGCGGCGccgCGGAgaccgcggagaccGCGgUGGCGa -3'
miRNA:   3'- aagCCUUGCCGCaa-GCCU-------------UGC-ACCGC- -5'
11043 3' -55.7 NC_002794.1 + 117293 0.7 0.778915
Target:  5'- -gCGGAcagcuGCGGCGUgucgagcgacUGGAAgGUGGCGa -3'
miRNA:   3'- aaGCCU-----UGCCGCAa---------GCCUUgCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 146850 0.7 0.796865
Target:  5'- gUCGGuGCGcgucguucGCGUUCGGGugGggGGCGc -3'
miRNA:   3'- aAGCCuUGC--------CGCAAGCCUugCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 55275 0.7 0.796865
Target:  5'- --gGGGGCGGCGguggCGGcGACGagGGCGg -3'
miRNA:   3'- aagCCUUGCCGCaa--GCC-UUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 118889 0.7 0.805629
Target:  5'- gUCGGccCGGUGUUCGcGuaggucCGUGGCGg -3'
miRNA:   3'- aAGCCuuGCCGCAAGC-Cuu----GCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 88076 0.7 0.805629
Target:  5'- -gCGGGGCcGCGguuugaaCGGGGCGUGGUGa -3'
miRNA:   3'- aaGCCUUGcCGCaa-----GCCUUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 12208 0.7 0.813388
Target:  5'- cUCGGAcgugccgGCGGCG-UCGGcGGCGccGGCGg -3'
miRNA:   3'- aAGCCU-------UGCCGCaAGCC-UUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 127922 0.7 0.814242
Target:  5'- --gGGGGCGGgGaUUCGGGGCGUGuCGg -3'
miRNA:   3'- aagCCUUGCCgC-AAGCCUUGCACcGC- -5'
11043 3' -55.7 NC_002794.1 + 119117 0.7 0.817643
Target:  5'- aUCGGGgacgcagaaggccugGCaGGCGUUCGGGugGUcGCGc -3'
miRNA:   3'- aAGCCU---------------UG-CCGCAAGCCUugCAcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.