miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 3' -55.7 NC_002794.1 + 142383 0.67 0.914563
Target:  5'- --gGGAGCGGCGgagacggCGGugcaggcGGCGUcGGCGg -3'
miRNA:   3'- aagCCUUGCCGCaa-----GCC-------UUGCA-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 191665 0.67 0.909307
Target:  5'- --gGGGACGGCGc-CGGcAGCGgcGGCGg -3'
miRNA:   3'- aagCCUUGCCGCaaGCC-UUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 142216 0.68 0.903252
Target:  5'- -gCGGcAGCGGCGgugCGGGgaGCGgcggaGGCGg -3'
miRNA:   3'- aaGCC-UUGCCGCaa-GCCU--UGCa----CCGC- -5'
11043 3' -55.7 NC_002794.1 + 106405 0.68 0.896973
Target:  5'- gUCGGAccccgGCGGCGc-CGGGGCucaUGGCGc -3'
miRNA:   3'- aAGCCU-----UGCCGCaaGCCUUGc--ACCGC- -5'
11043 3' -55.7 NC_002794.1 + 26648 0.68 0.896973
Target:  5'- -cCGG-ACGGCGgcCGGcuCGUcGGCGg -3'
miRNA:   3'- aaGCCuUGCCGCaaGCCuuGCA-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 37825 0.68 0.890471
Target:  5'- -cCGucACGGCGacggCGGcuAACGUGGCGa -3'
miRNA:   3'- aaGCcuUGCCGCaa--GCC--UUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 95851 0.68 0.890471
Target:  5'- -cCGGGgagGCGGCGggCGGGccguuucaGUGUGGCGa -3'
miRNA:   3'- aaGCCU---UGCCGCaaGCCU--------UGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 141458 0.68 0.890471
Target:  5'- -gCGGcGCGGCGUcCGG-AC-UGGCGa -3'
miRNA:   3'- aaGCCuUGCCGCAaGCCuUGcACCGC- -5'
11043 3' -55.7 NC_002794.1 + 94043 0.68 0.890471
Target:  5'- -cCGaGAGCGGCGg-CGGuGCGggGGCGg -3'
miRNA:   3'- aaGC-CUUGCCGCaaGCCuUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 108328 0.68 0.890471
Target:  5'- cUUGGAcgGCGGCGca-GGAggAgGUGGCGg -3'
miRNA:   3'- aAGCCU--UGCCGCaagCCU--UgCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 107239 0.68 0.883751
Target:  5'- --gGGGGCGGCGUcgCGGAccugGCccGGCGg -3'
miRNA:   3'- aagCCUUGCCGCAa-GCCU----UGcaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 185174 0.68 0.876817
Target:  5'- -cCGGcGCGGCGcggUCGGcGCGgucGGCGc -3'
miRNA:   3'- aaGCCuUGCCGCa--AGCCuUGCa--CCGC- -5'
11043 3' -55.7 NC_002794.1 + 95762 0.69 0.862321
Target:  5'- -gCGGGGCGGCGgcCGcGAcgGCGgccggGGCGa -3'
miRNA:   3'- aaGCCUUGCCGCaaGC-CU--UGCa----CCGC- -5'
11043 3' -55.7 NC_002794.1 + 77988 0.69 0.862321
Target:  5'- cUCGGAACGGCGggCGuuguuccGGCGgcGGCGc -3'
miRNA:   3'- aAGCCUUGCCGCaaGCc------UUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 91206 0.69 0.862321
Target:  5'- gUUCGcGGACGGCGacgcgacggCGGAcgGCGcGGCGg -3'
miRNA:   3'- -AAGC-CUUGCCGCaa-------GCCU--UGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 142483 0.69 0.862321
Target:  5'- -gUGGAcgcguGCGGCGc-CGGcagcGACGUGGCGg -3'
miRNA:   3'- aaGCCU-----UGCCGCaaGCC----UUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 31057 0.69 0.862321
Target:  5'- -gCGGcACGGCGgccagcUCGcgcagcacgucGAGCGUGGCGa -3'
miRNA:   3'- aaGCCuUGCCGCa-----AGC-----------CUUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 105865 0.69 0.862321
Target:  5'- -aCGuGAGCGGCGc-CGaGGACGUGGgGg -3'
miRNA:   3'- aaGC-CUUGCCGCaaGC-CUUGCACCgC- -5'
11043 3' -55.7 NC_002794.1 + 37880 0.69 0.854771
Target:  5'- cUCGGG-CGGCG---GGGGCGgUGGCGg -3'
miRNA:   3'- aAGCCUuGCCGCaagCCUUGC-ACCGC- -5'
11043 3' -55.7 NC_002794.1 + 95816 0.69 0.854771
Target:  5'- --gGGAGCGGCGgcggccgggGGAGCGgcGGCGg -3'
miRNA:   3'- aagCCUUGCCGCaag------CCUUGCa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.