miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 3' -55.7 NC_002794.1 + 12208 0.7 0.813388
Target:  5'- cUCGGAcgugccgGCGGCG-UCGGcGGCGccGGCGg -3'
miRNA:   3'- aAGCCU-------UGCCGCaAGCC-UUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 20531 0.72 0.712558
Target:  5'- -aCGGAcUGGCGUUCGcGACGacgGGCGa -3'
miRNA:   3'- aaGCCUuGCCGCAAGCcUUGCa--CCGC- -5'
11043 3' -55.7 NC_002794.1 + 26648 0.68 0.896973
Target:  5'- -cCGG-ACGGCGgcCGGcuCGUcGGCGg -3'
miRNA:   3'- aaGCCuUGCCGCaaGCCuuGCA-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 31057 0.69 0.862321
Target:  5'- -gCGGcACGGCGgccagcUCGcgcagcacgucGAGCGUGGCGa -3'
miRNA:   3'- aaGCCuUGCCGCa-----AGC-----------CUUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 34843 0.78 0.38098
Target:  5'- -cCGGAGCgGGCG-UCGGAGCG-GGCGc -3'
miRNA:   3'- aaGCCUUG-CCGCaAGCCUUGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 37825 0.68 0.890471
Target:  5'- -cCGucACGGCGacggCGGcuAACGUGGCGa -3'
miRNA:   3'- aaGCcuUGCCGCaa--GCC--UUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 37880 0.69 0.854771
Target:  5'- cUCGGG-CGGCG---GGGGCGgUGGCGg -3'
miRNA:   3'- aAGCCUuGCCGCaagCCUUGC-ACCGC- -5'
11043 3' -55.7 NC_002794.1 + 48628 0.66 0.949512
Target:  5'- -gCGGAGCGGCcgUCGGGGCcc-GCGa -3'
miRNA:   3'- aaGCCUUGCCGcaAGCCUUGcacCGC- -5'
11043 3' -55.7 NC_002794.1 + 51065 0.72 0.702745
Target:  5'- -gCGGcGACGGCGaccUCcGAGCGUGGCGc -3'
miRNA:   3'- aaGCC-UUGCCGCa--AGcCUUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 55275 0.7 0.796865
Target:  5'- --gGGGGCGGCGguggCGGcGACGagGGCGg -3'
miRNA:   3'- aagCCUUGCCGCaa--GCC-UUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 58058 0.72 0.70176
Target:  5'- gUCGGcggccccGGCGGCGg-CGGGACG-GGCGg -3'
miRNA:   3'- aAGCC-------UUGCCGCaaGCCUUGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 66659 0.66 0.936152
Target:  5'- aUCGGuAACGGCGUcgUGGucAACGgccccGGCGc -3'
miRNA:   3'- aAGCC-UUGCCGCAa-GCC--UUGCa----CCGC- -5'
11043 3' -55.7 NC_002794.1 + 77988 0.69 0.862321
Target:  5'- cUCGGAACGGCGggCGuuguuccGGCGgcGGCGc -3'
miRNA:   3'- aAGCCUUGCCGCaaGCc------UUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 87364 0.67 0.931243
Target:  5'- -gCGGcgAGCGGCGUUCuGGGCGgcgcGGCc -3'
miRNA:   3'- aaGCC--UUGCCGCAAGcCUUGCa---CCGc -5'
11043 3' -55.7 NC_002794.1 + 88076 0.7 0.805629
Target:  5'- -gCGGGGCcGCGguuugaaCGGGGCGUGGUGa -3'
miRNA:   3'- aaGCCUUGcCGCaa-----GCCUUGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 89948 0.76 0.495355
Target:  5'- cUCGGGAgccgacgucgaGGCGUUCGGAcCGUGGUGc -3'
miRNA:   3'- aAGCCUUg----------CCGCAAGCCUuGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 91206 0.69 0.862321
Target:  5'- gUUCGcGGACGGCGacgcgacggCGGAcgGCGcGGCGg -3'
miRNA:   3'- -AAGC-CUUGCCGCaa-------GCCU--UGCaCCGC- -5'
11043 3' -55.7 NC_002794.1 + 94043 0.68 0.890471
Target:  5'- -cCGaGAGCGGCGg-CGGuGCGggGGCGg -3'
miRNA:   3'- aaGC-CUUGCCGCaaGCCuUGCa-CCGC- -5'
11043 3' -55.7 NC_002794.1 + 94486 0.71 0.731977
Target:  5'- -gCGGAcGCGGCcg-CGGGcCGUGGCGg -3'
miRNA:   3'- aaGCCU-UGCCGcaaGCCUuGCACCGC- -5'
11043 3' -55.7 NC_002794.1 + 94882 0.7 0.822695
Target:  5'- -aCGGAGCGGaucCGgcugaCGGucGACGUGGCGa -3'
miRNA:   3'- aaGCCUUGCC---GCaa---GCC--UUGCACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.