miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 5' -63.5 NC_002794.1 + 39706 0.66 0.693416
Target:  5'- aCCGCCGGCGcua-CCG-ACCGCUg- -3'
miRNA:   3'- gGGCGGCCGCacacGGCgUGGCGAgc -5'
11043 5' -63.5 NC_002794.1 + 69037 0.66 0.693416
Target:  5'- cCUCGCCGGCuucc-UCGCuCCGCUCGc -3'
miRNA:   3'- -GGGCGGCCGcacacGGCGuGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 194913 0.66 0.693416
Target:  5'- gCUCGCCGacaGCagcgGCCGCACCaGCUCc -3'
miRNA:   3'- -GGGCGGC---CGcacaCGGCGUGG-CGAGc -5'
11043 5' -63.5 NC_002794.1 + 12233 0.66 0.693416
Target:  5'- -gCGCCGGCG-GcGCCGU-CCGCggCGc -3'
miRNA:   3'- ggGCGGCCGCaCaCGGCGuGGCGa-GC- -5'
11043 5' -63.5 NC_002794.1 + 60064 0.66 0.693416
Target:  5'- gCCGCCGcacCGUGccGCCGC-CCGCg-- -3'
miRNA:   3'- gGGCGGCc--GCACa-CGGCGuGGCGagc -5'
11043 5' -63.5 NC_002794.1 + 71754 0.66 0.69155
Target:  5'- gCCGCCGGCucuuccgaccgGU-CCGCGCCGUcgcgCGg -3'
miRNA:   3'- gGGCGGCCGca---------CAcGGCGUGGCGa---GC- -5'
11043 5' -63.5 NC_002794.1 + 92439 0.66 0.690616
Target:  5'- -aCGCUGGcCGUGcgggGCCGCGCggacuucaugagcgCGCUCu -3'
miRNA:   3'- ggGCGGCC-GCACa---CGGCGUG--------------GCGAGc -5'
11043 5' -63.5 NC_002794.1 + 105403 0.66 0.685006
Target:  5'- gCCGCCGcGCGgaucucggccuccagGgugGCCGCcGCCGCgccggCGg -3'
miRNA:   3'- gGGCGGC-CGCa--------------Ca--CGGCG-UGGCGa----GC- -5'
11043 5' -63.5 NC_002794.1 + 42211 0.66 0.683133
Target:  5'- gCCGCCGGUc--UGCCGCuggaucaGCCGCgagaCGg -3'
miRNA:   3'- gGGCGGCCGcacACGGCG-------UGGCGa---GC- -5'
11043 5' -63.5 NC_002794.1 + 38566 0.66 0.681258
Target:  5'- gCCCGCCGGCGccucgacggagucgGCCGCcuccucCCGgaCGa -3'
miRNA:   3'- -GGGCGGCCGCaca-----------CGGCGu-----GGCgaGC- -5'
11043 5' -63.5 NC_002794.1 + 192614 0.66 0.678443
Target:  5'- cUCCGCCaggugcggacagucgGGCGgccgcuccaGCCGCGCCGC-CGc -3'
miRNA:   3'- -GGGCGG---------------CCGCaca------CGGCGUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 123737 0.66 0.674686
Target:  5'- cCCCaCCgGGCGUucccgaGCCGUGCCGCUUc -3'
miRNA:   3'- -GGGcGG-CCGCAca----CGGCGUGGCGAGc -5'
11043 5' -63.5 NC_002794.1 + 146343 0.66 0.674686
Target:  5'- cCCCGUcgucgaucgCGGCGgccgcccggGUaGCCGU-CCGCUCGu -3'
miRNA:   3'- -GGGCG---------GCCGCa--------CA-CGGCGuGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 46514 0.66 0.674686
Target:  5'- gCCUGUaauaGUGUGUGCCuC-CCGCUCGu -3'
miRNA:   3'- -GGGCGgc--CGCACACGGcGuGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 94662 0.66 0.674686
Target:  5'- aCCGCCGGC-UGUGCC-CGgC-CUUGg -3'
miRNA:   3'- gGGCGGCCGcACACGGcGUgGcGAGC- -5'
11043 5' -63.5 NC_002794.1 + 75859 0.66 0.674686
Target:  5'- cCCgCGCUGGaCG-GU-CCGCGuCCGCUUGa -3'
miRNA:   3'- -GG-GCGGCC-GCaCAcGGCGU-GGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 186995 0.66 0.673746
Target:  5'- cUCCGCCGGCugcgucgucagGUacggcgucagcggGUGCCGauaCACCgGCUCGc -3'
miRNA:   3'- -GGGCGGCCG-----------CA-------------CACGGC---GUGG-CGAGC- -5'
11043 5' -63.5 NC_002794.1 + 99776 0.66 0.673746
Target:  5'- gCCCgcgguGCCGGCGUcgacuacGaGCgCGCGCCGCgggCGc -3'
miRNA:   3'- -GGG-----CGGCCGCA-------CaCG-GCGUGGCGa--GC- -5'
11043 5' -63.5 NC_002794.1 + 60643 0.66 0.671865
Target:  5'- -gCGCCGGCGgcgccggccacccgGCgCGCGCCGC-CGc -3'
miRNA:   3'- ggGCGGCCGCaca-----------CG-GCGUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 189478 0.66 0.665273
Target:  5'- gCCGCgGGCGUcGUG-UGCACCcaGCUgGg -3'
miRNA:   3'- gGGCGgCCGCA-CACgGCGUGG--CGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.