miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 5' -63.5 NC_002794.1 + 19491 0.79 0.121329
Target:  5'- gCCCGCaccgacgaCGGCGgagGUCGCGCCGCUCGg -3'
miRNA:   3'- -GGGCG--------GCCGCacaCGGCGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 58025 0.79 0.121329
Target:  5'- gCCGCCGGCGaacccGCCGCGCCGCcCGu -3'
miRNA:   3'- gGGCGGCCGCaca--CGGCGUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 113427 0.79 0.133562
Target:  5'- -aCGUCGGCGUucUGCCGCGCCGuCUCGg -3'
miRNA:   3'- ggGCGGCCGCAc-ACGGCGUGGC-GAGC- -5'
11043 5' -63.5 NC_002794.1 + 67426 0.77 0.165332
Target:  5'- -gCGUCGGCGgcGUGUCGCGCCGCUuCGg -3'
miRNA:   3'- ggGCGGCCGCa-CACGGCGUGGCGA-GC- -5'
11043 5' -63.5 NC_002794.1 + 156838 0.77 0.177349
Target:  5'- aCCGaCCGGgGgucgGUGCCGCGcguucCCGCUCGa -3'
miRNA:   3'- gGGC-GGCCgCa---CACGGCGU-----GGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 189862 0.77 0.177349
Target:  5'- gCCGUCGGCGUcGUcGCCGCcgaccggcCCGCUCGg -3'
miRNA:   3'- gGGCGGCCGCA-CA-CGGCGu-------GGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 101612 0.77 0.181524
Target:  5'- gCCCGCCgGGCGgggGUGCCGUuucguCCGCgagCGu -3'
miRNA:   3'- -GGGCGG-CCGCa--CACGGCGu----GGCGa--GC- -5'
11043 5' -63.5 NC_002794.1 + 141645 0.76 0.194575
Target:  5'- --gGCCGGCGUG-GCCGCGgCCGC-CGg -3'
miRNA:   3'- gggCGGCCGCACaCGGCGU-GGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 193723 0.75 0.21815
Target:  5'- cCCCGCCGGUGUccucGCCGC-CCGCggcuUCGg -3'
miRNA:   3'- -GGGCGGCCGCAca--CGGCGuGGCG----AGC- -5'
11043 5' -63.5 NC_002794.1 + 15267 0.75 0.233438
Target:  5'- aCCGUCGGCGa--GCCGCGCgGCUCc -3'
miRNA:   3'- gGGCGGCCGCacaCGGCGUGgCGAGc -5'
11043 5' -63.5 NC_002794.1 + 31343 0.75 0.233438
Target:  5'- gCCCGCC-GUGUccGCCGC-CCGCUCGu -3'
miRNA:   3'- -GGGCGGcCGCAcaCGGCGuGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 55006 0.75 0.238731
Target:  5'- aCUCGCCgGGCGUccgccGCCGCGCCGCcgCGa -3'
miRNA:   3'- -GGGCGG-CCGCAca---CGGCGUGGCGa-GC- -5'
11043 5' -63.5 NC_002794.1 + 12050 0.74 0.244124
Target:  5'- cCCUGCCGGUaucucUGgGCCGCGCCGC-CGa -3'
miRNA:   3'- -GGGCGGCCGc----ACaCGGCGUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 192997 0.74 0.249617
Target:  5'- cCUCGcCCGGCGUGUGCaGCGCCaGCggCGu -3'
miRNA:   3'- -GGGC-GGCCGCACACGgCGUGG-CGa-GC- -5'
11043 5' -63.5 NC_002794.1 + 149275 0.74 0.249617
Target:  5'- cCCCGCCGGCG-GcGCgGCGgcUCGCUCa -3'
miRNA:   3'- -GGGCGGCCGCaCaCGgCGU--GGCGAGc -5'
11043 5' -63.5 NC_002794.1 + 101566 0.74 0.260911
Target:  5'- -aCGCCGGCGggaGUGCCGgcCGCCGCggcCGg -3'
miRNA:   3'- ggGCGGCCGCa--CACGGC--GUGGCGa--GC- -5'
11043 5' -63.5 NC_002794.1 + 82565 0.74 0.260911
Target:  5'- gCCCaGCCGGCGag-GCCGaCGCCGC-CGa -3'
miRNA:   3'- -GGG-CGGCCGCacaCGGC-GUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 120437 0.73 0.28474
Target:  5'- aCUCaGCCGGCGUGgaacGCCGCgucgGCCugGCUCGa -3'
miRNA:   3'- -GGG-CGGCCGCACa---CGGCG----UGG--CGAGC- -5'
11043 5' -63.5 NC_002794.1 + 61528 0.73 0.28474
Target:  5'- gCCGCCGGCGgccGCCGCgaagacgacGCCGCcgCGg -3'
miRNA:   3'- gGGCGGCCGCacaCGGCG---------UGGCGa-GC- -5'
11043 5' -63.5 NC_002794.1 + 137065 0.73 0.289083
Target:  5'- gCCCGUCGGCGgGcucuucgcgcgccaUGUCGC-CCGCUCGc -3'
miRNA:   3'- -GGGCGGCCGCaC--------------ACGGCGuGGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.