miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 5' -63.5 NC_002794.1 + 62513 0.66 0.665273
Target:  5'- gCCGCCGGCGccuccGCC-CACCGUgaCGa -3'
miRNA:   3'- gGGCGGCCGCaca--CGGcGUGGCGa-GC- -5'
11043 5' -63.5 NC_002794.1 + 181691 0.66 0.665273
Target:  5'- aCCGCCGcGCcucgGCC-CACaCGCUCGg -3'
miRNA:   3'- gGGCGGC-CGcacaCGGcGUG-GCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 155122 0.66 0.665273
Target:  5'- aCCC-CUGGaggGUG-GCCagGCACCGUUCGa -3'
miRNA:   3'- -GGGcGGCCg--CACaCGG--CGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 110259 0.66 0.665273
Target:  5'- uCCCGCgCGGCGUcgcgacgGCgGCcGCCGUccUCGg -3'
miRNA:   3'- -GGGCG-GCCGCAca-----CGgCG-UGGCG--AGC- -5'
11043 5' -63.5 NC_002794.1 + 188078 0.66 0.665273
Target:  5'- aCCGUCGGUucg-GCCaaGUACUGCUCGg -3'
miRNA:   3'- gGGCGGCCGcacaCGG--CGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 189478 0.66 0.665273
Target:  5'- gCCGCgGGCGUcGUG-UGCACCcaGCUgGg -3'
miRNA:   3'- gGGCGgCCGCA-CACgGCGUGG--CGAgC- -5'
11043 5' -63.5 NC_002794.1 + 23659 0.66 0.665273
Target:  5'- cCCCGagcgaCCGGCGgaaaGUGUccccgaacaCGCGCCGC-CGa -3'
miRNA:   3'- -GGGC-----GGCCGCa---CACG---------GCGUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 56567 0.66 0.655837
Target:  5'- cCCCGCCGcCGaccGcCCGCGCCGCggCGc -3'
miRNA:   3'- -GGGCGGCcGCacaC-GGCGUGGCGa-GC- -5'
11043 5' -63.5 NC_002794.1 + 90970 0.66 0.655837
Target:  5'- gCCCGCuuCGGCGUG-GCCucGUACCGggCc -3'
miRNA:   3'- -GGGCG--GCCGCACaCGG--CGUGGCgaGc -5'
11043 5' -63.5 NC_002794.1 + 121985 0.66 0.655837
Target:  5'- uCCCGCCGaGCGcG-GCCGggaGCUGUUCc -3'
miRNA:   3'- -GGGCGGC-CGCaCaCGGCg--UGGCGAGc -5'
11043 5' -63.5 NC_002794.1 + 99600 0.66 0.655837
Target:  5'- -gCGgCGGCGcGcGCuCGCGCCGcCUCGg -3'
miRNA:   3'- ggGCgGCCGCaCaCG-GCGUGGC-GAGC- -5'
11043 5' -63.5 NC_002794.1 + 67016 0.66 0.655837
Target:  5'- gUCCGgCGGCGgcgGCCGgcuccCGCCGCgUCGc -3'
miRNA:   3'- -GGGCgGCCGCacaCGGC-----GUGGCG-AGC- -5'
11043 5' -63.5 NC_002794.1 + 112222 0.66 0.654893
Target:  5'- gCCCGCUccagGGCGUccaggGCCGCcgcgaacGCCGC-CGg -3'
miRNA:   3'- -GGGCGG----CCGCAca---CGGCG-------UGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 114314 0.66 0.646385
Target:  5'- aUCCGCCGGaggcgcuccuCGUaGUcccGCCGCAgCgGCUCGu -3'
miRNA:   3'- -GGGCGGCC----------GCA-CA---CGGCGU-GgCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 100287 0.66 0.646385
Target:  5'- uCCCGagcuuCGGCuG-GUGCCGCcuccGCCGCUgGc -3'
miRNA:   3'- -GGGCg----GCCG-CaCACGGCG----UGGCGAgC- -5'
11043 5' -63.5 NC_002794.1 + 175413 0.66 0.646385
Target:  5'- uCCaCGCCGGUGagcgaUGCCGCGgCGCa-- -3'
miRNA:   3'- -GG-GCGGCCGCac---ACGGCGUgGCGagc -5'
11043 5' -63.5 NC_002794.1 + 82923 0.66 0.646385
Target:  5'- cCCCGCCGcCGUc-GCCGCuCCGaCUCc -3'
miRNA:   3'- -GGGCGGCcGCAcaCGGCGuGGC-GAGc -5'
11043 5' -63.5 NC_002794.1 + 93707 0.66 0.646385
Target:  5'- aCgCGCCuGGuCGaccUGcUGuuGCGCCGCUCGc -3'
miRNA:   3'- -GgGCGG-CC-GC---AC-ACggCGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 71348 0.66 0.646385
Target:  5'- gUCCGCCaGGCGgcgcagcagGUGCgGCAgCCGCc-- -3'
miRNA:   3'- -GGGCGG-CCGCa--------CACGgCGU-GGCGagc -5'
11043 5' -63.5 NC_002794.1 + 17439 0.66 0.646385
Target:  5'- gCCGCCGGCGcucggGcCCGCgACCGaggUCGa -3'
miRNA:   3'- gGGCGGCCGCaca--C-GGCG-UGGCg--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.