miRNA display CGI


Results 1 - 20 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11043 5' -63.5 NC_002794.1 + 870 0.68 0.533009
Target:  5'- gCCCGCgaggcgguCGGCGUgcgcgcgggccggGUGCCaaCGCCGCUCc -3'
miRNA:   3'- -GGGCG--------GCCGCA-------------CACGGc-GUGGCGAGc -5'
11043 5' -63.5 NC_002794.1 + 11857 0.67 0.599106
Target:  5'- aCCGCCGGCGacgaCCGC-CCGCcccgCGa -3'
miRNA:   3'- gGGCGGCCGCacacGGCGuGGCGa---GC- -5'
11043 5' -63.5 NC_002794.1 + 12050 0.74 0.244124
Target:  5'- cCCUGCCGGUaucucUGgGCCGCGCCGC-CGa -3'
miRNA:   3'- -GGGCGGCCGc----ACaCGGCGUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 12179 0.69 0.515732
Target:  5'- gCCGCCGaCGccgccgcgGCCggGCGCCGCUCGg -3'
miRNA:   3'- gGGCGGCcGCaca-----CGG--CGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 12233 0.66 0.693416
Target:  5'- -gCGCCGGCG-GcGCCGU-CCGCggCGc -3'
miRNA:   3'- ggGCGGCCGCaCaCGGCGuGGCGa-GC- -5'
11043 5' -63.5 NC_002794.1 + 12356 0.7 0.445796
Target:  5'- aCCCGCgucacguaccuCGGCGUGcucgccUGCCGCGCuCGCcUGg -3'
miRNA:   3'- -GGGCG-----------GCCGCAC------ACGGCGUG-GCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 13096 0.71 0.369377
Target:  5'- uCCCGggggacgaggugcguUCGGCGggGUcGCCGCGCgGCUCGc -3'
miRNA:   3'- -GGGC---------------GGCCGCa-CA-CGGCGUGgCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 13949 0.66 0.665273
Target:  5'- aCCGUUcGUGcGUGUCGaGCCGCUCGg -3'
miRNA:   3'- gGGCGGcCGCaCACGGCgUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 14452 0.67 0.635977
Target:  5'- cUCCGCgGGCGaccGUGUcgagcggCGCGCCGCgcUCGc -3'
miRNA:   3'- -GGGCGgCCGCa--CACG-------GCGUGGCG--AGC- -5'
11043 5' -63.5 NC_002794.1 + 14505 0.72 0.330511
Target:  5'- gCCCGCgcucgCGGCGcucGUgGCGCCGCUCGg -3'
miRNA:   3'- -GGGCG-----GCCGCacaCGgCGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 14699 0.7 0.437425
Target:  5'- uCCUGaCGGCGUGgGgaGCGCUGCUCGc -3'
miRNA:   3'- -GGGCgGCCGCACaCggCGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 15267 0.75 0.233438
Target:  5'- aCCGUCGGCGa--GCCGCGCgGCUCc -3'
miRNA:   3'- gGGCGGCCGCacaCGGCGUGgCGAGc -5'
11043 5' -63.5 NC_002794.1 + 17331 0.69 0.486287
Target:  5'- gCCGCCGGCGUccccuccgacccacGccgUGCCGagaacuCACCGUUCGc -3'
miRNA:   3'- gGGCGGCCGCA--------------C---ACGGC------GUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 17439 0.66 0.646385
Target:  5'- gCCGCCGGCGcucggGcCCGCgACCGaggUCGa -3'
miRNA:   3'- gGGCGGCCGCaca--C-GGCG-UGGCg--AGC- -5'
11043 5' -63.5 NC_002794.1 + 17642 0.7 0.445796
Target:  5'- uCCCGCCGccGCGgccGCCGCcACCGC-CGc -3'
miRNA:   3'- -GGGCGGC--CGCacaCGGCG-UGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 19065 0.69 0.488932
Target:  5'- aCCGCCuGCGgucacgGUGCCgugaGCugCGUUCGc -3'
miRNA:   3'- gGGCGGcCGCa-----CACGG----CGugGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 19491 0.79 0.121329
Target:  5'- gCCCGCaccgacgaCGGCGgagGUCGCGCCGCUCGg -3'
miRNA:   3'- -GGGCG--------GCCGCacaCGGCGUGGCGAGC- -5'
11043 5' -63.5 NC_002794.1 + 19544 0.7 0.420957
Target:  5'- gCCCGCCGGUGUcGgacCCGgACUGCUuCGa -3'
miRNA:   3'- -GGGCGGCCGCA-Cac-GGCgUGGCGA-GC- -5'
11043 5' -63.5 NC_002794.1 + 20188 0.68 0.561619
Target:  5'- gCCCGCCGcccaaccuGCuac-GCCGCACCGC-CGa -3'
miRNA:   3'- -GGGCGGC--------CGcacaCGGCGUGGCGaGC- -5'
11043 5' -63.5 NC_002794.1 + 23659 0.66 0.665273
Target:  5'- cCCCGagcgaCCGGCGgaaaGUGUccccgaacaCGCGCCGC-CGa -3'
miRNA:   3'- -GGGC-----GGCCGCa---CACG---------GCGUGGCGaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.