miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11044 3' -64.2 NC_002794.1 + 69591 0.66 0.619527
Target:  5'- gCGUCgGacgagCGGGaGGCCGCCUCCacgaCCAa -3'
miRNA:   3'- -GUAGaCg----GCCCgCCGGCGGAGGa---GGU- -5'
11044 3' -64.2 NC_002794.1 + 188360 0.66 0.609945
Target:  5'- cCGUCcgGCCGgcGGCGGCCgaggGCgUUCUCCc -3'
miRNA:   3'- -GUAGa-CGGC--CCGCCGG----CGgAGGAGGu -5'
11044 3' -64.2 NC_002794.1 + 128430 0.66 0.609945
Target:  5'- ---aUGaCCGGGUGGCCcgcgcgcacggcGCCUCCggagcCCAg -3'
miRNA:   3'- guagAC-GGCCCGCCGG------------CGGAGGa----GGU- -5'
11044 3' -64.2 NC_002794.1 + 128486 0.66 0.609945
Target:  5'- gGUCgcgGaCCGGG-GGCCGUC-CCUUCGg -3'
miRNA:   3'- gUAGa--C-GGCCCgCCGGCGGaGGAGGU- -5'
11044 3' -64.2 NC_002794.1 + 43259 0.66 0.607073
Target:  5'- ----cGCCGGGUGGuagcacucgcagauCCGCUgccggcugUCCUCCAg -3'
miRNA:   3'- guagaCGGCCCGCC--------------GGCGG--------AGGAGGU- -5'
11044 3' -64.2 NC_002794.1 + 187426 0.66 0.600378
Target:  5'- gCGUCUGCUGGaaGGCCaGCCgcgCCgucugCCGc -3'
miRNA:   3'- -GUAGACGGCCcgCCGG-CGGa--GGa----GGU- -5'
11044 3' -64.2 NC_002794.1 + 34046 0.66 0.600378
Target:  5'- --gCUGCCGGGcCGGCCcgcgcacgacccGCCguUCCcgCCGg -3'
miRNA:   3'- guaGACGGCCC-GCCGG------------CGG--AGGa-GGU- -5'
11044 3' -64.2 NC_002794.1 + 65952 0.66 0.600378
Target:  5'- gUAUC-GUCGcGaGCGGCggCGUCUCCUCCGg -3'
miRNA:   3'- -GUAGaCGGC-C-CGCCG--GCGGAGGAGGU- -5'
11044 3' -64.2 NC_002794.1 + 44255 0.66 0.599422
Target:  5'- ---gUGCCGGGCGGCUcgGCCgCCggggacggaggagUCCGc -3'
miRNA:   3'- guagACGGCCCGCCGG--CGGaGG-------------AGGU- -5'
11044 3' -64.2 NC_002794.1 + 16296 0.66 0.59083
Target:  5'- aGUCUaGCCuGGCGGCCGCggCCggCUg -3'
miRNA:   3'- gUAGA-CGGcCCGCCGGCGgaGGa-GGu -5'
11044 3' -64.2 NC_002794.1 + 58699 0.66 0.58131
Target:  5'- --gCUGCuCGGGCuGGUgCGCUUCCUgCAc -3'
miRNA:   3'- guaGACG-GCCCG-CCG-GCGGAGGAgGU- -5'
11044 3' -64.2 NC_002794.1 + 32302 0.66 0.58131
Target:  5'- ----cGCCGcGGCGGCCGCg-CCggCCGc -3'
miRNA:   3'- guagaCGGC-CCGCCGGCGgaGGa-GGU- -5'
11044 3' -64.2 NC_002794.1 + 187752 0.66 0.58131
Target:  5'- cCAUCUccgaacgccGCCGGcGcCGGUCGCCUCgaCCc -3'
miRNA:   3'- -GUAGA---------CGGCC-C-GCCGGCGGAGgaGGu -5'
11044 3' -64.2 NC_002794.1 + 193365 0.66 0.571821
Target:  5'- ----aGCCGGuGCcacgGGCCGCgCUCCUCg- -3'
miRNA:   3'- guagaCGGCC-CG----CCGGCG-GAGGAGgu -5'
11044 3' -64.2 NC_002794.1 + 70054 0.66 0.571821
Target:  5'- gGUCgcccgGUCGGGCGGCCGCagCCg-CAg -3'
miRNA:   3'- gUAGa----CGGCCCGCCGGCGgaGGagGU- -5'
11044 3' -64.2 NC_002794.1 + 74593 0.66 0.571821
Target:  5'- gUAUCUGCUGuaCGGCCGCaccuUCC-CCAu -3'
miRNA:   3'- -GUAGACGGCccGCCGGCGg---AGGaGGU- -5'
11044 3' -64.2 NC_002794.1 + 181396 0.66 0.571821
Target:  5'- aGUUcGcCCGGGcCGGCCGCCgCCaccgCCAu -3'
miRNA:   3'- gUAGaC-GGCCC-GCCGGCGGaGGa---GGU- -5'
11044 3' -64.2 NC_002794.1 + 149974 0.66 0.56237
Target:  5'- --cCUGCCGcggaccGGCGGCCGCUaUCUgCCGc -3'
miRNA:   3'- guaGACGGC------CCGCCGGCGGaGGA-GGU- -5'
11044 3' -64.2 NC_002794.1 + 71399 0.66 0.56237
Target:  5'- gGUCUGCggcuCGGGcCGGCCGUCgUCCagCGu -3'
miRNA:   3'- gUAGACG----GCCC-GCCGGCGG-AGGagGU- -5'
11044 3' -64.2 NC_002794.1 + 39672 0.66 0.56237
Target:  5'- -cUCUGCCGcGCGGUgCGCUUCUUCg- -3'
miRNA:   3'- guAGACGGCcCGCCG-GCGGAGGAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.