miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11045 3' -63 NC_002794.1 + 124991 0.66 0.718467
Target:  5'- aCGUCCgCgccaagCGACAcccGAAgcGGUCCGCGGCg -3'
miRNA:   3'- -GCAGGgG------GCUGUc--CUU--CCGGGCGCCG- -5'
11045 3' -63 NC_002794.1 + 21871 0.66 0.718467
Target:  5'- gGUCCgcgaggCCGGCcGcGggGuGUCCGCGGCc -3'
miRNA:   3'- gCAGGg-----GGCUGuC-CuuC-CGGGCGCCG- -5'
11045 3' -63 NC_002794.1 + 55195 0.66 0.718467
Target:  5'- gCGgCCCuaacaCCGGCgcGGcGGAGGCCgGCGGUc -3'
miRNA:   3'- -GCaGGG-----GGCUG--UC-CUUCCGGgCGCCG- -5'
11045 3' -63 NC_002794.1 + 94027 0.66 0.718467
Target:  5'- gGUUCCgCCGGC----GGGCCCgagaGCGGCg -3'
miRNA:   3'- gCAGGG-GGCUGuccuUCCGGG----CGCCG- -5'
11045 3' -63 NC_002794.1 + 126198 0.66 0.718467
Target:  5'- aCGUCaUCUaCGugGGcGAGGGCCaGCGGUa -3'
miRNA:   3'- -GCAG-GGG-GCugUC-CUUCCGGgCGCCG- -5'
11045 3' -63 NC_002794.1 + 191647 0.66 0.709212
Target:  5'- cCGUCCagcagCCCGcCGGGGGacGGCgCCggcaGCGGCg -3'
miRNA:   3'- -GCAGG-----GGGCuGUCCUU--CCG-GG----CGCCG- -5'
11045 3' -63 NC_002794.1 + 107045 0.66 0.709212
Target:  5'- --aCCCCCGcgucggaggcgGCGGGcgcGGCgCCGcCGGCa -3'
miRNA:   3'- gcaGGGGGC-----------UGUCCuu-CCG-GGC-GCCG- -5'
11045 3' -63 NC_002794.1 + 29203 0.66 0.6999
Target:  5'- cCGUCCgUCCGGC-GGucGGCggCCGuCGGCc -3'
miRNA:   3'- -GCAGG-GGGCUGuCCuuCCG--GGC-GCCG- -5'
11045 3' -63 NC_002794.1 + 184170 0.66 0.6999
Target:  5'- gCGUCUccaCCCGACAccgcggcgcccGGcGAGGCCCGCucccGCc -3'
miRNA:   3'- -GCAGG---GGGCUGU-----------CC-UUCCGGGCGc---CG- -5'
11045 3' -63 NC_002794.1 + 126354 0.66 0.698966
Target:  5'- uGUCCCggcuCCGAUuucgccgcugcguGGGcgccGGGGCCugCGCGGCg -3'
miRNA:   3'- gCAGGG----GGCUG-------------UCC----UUCCGG--GCGCCG- -5'
11045 3' -63 NC_002794.1 + 36341 0.66 0.698966
Target:  5'- aGUCgagcaaCCCGGCgugcgcggccaccGGGugcGcGCCCGCGGCg -3'
miRNA:   3'- gCAGg-----GGGCUG-------------UCCuu-C-CGGGCGCCG- -5'
11045 3' -63 NC_002794.1 + 13109 0.66 0.690539
Target:  5'- gGUgCgUUCGGCGGGGucGCCgCGCGGCu -3'
miRNA:   3'- gCA-GgGGGCUGUCCUucCGG-GCGCCG- -5'
11045 3' -63 NC_002794.1 + 65241 0.66 0.690539
Target:  5'- gGUCgCCgCGGCGGcGAuccGGCCUcgccgaGCGGCg -3'
miRNA:   3'- gCAGgGG-GCUGUC-CUu--CCGGG------CGCCG- -5'
11045 3' -63 NC_002794.1 + 122284 0.66 0.690539
Target:  5'- aCGU-CCUgGACGGGcgcgagGAGuGCCCGCuGGCc -3'
miRNA:   3'- -GCAgGGGgCUGUCC------UUC-CGGGCG-CCG- -5'
11045 3' -63 NC_002794.1 + 194494 0.66 0.690539
Target:  5'- cCGcCCCUCcGCGccc-GGCCCGCGGCc -3'
miRNA:   3'- -GCaGGGGGcUGUccuuCCGGGCGCCG- -5'
11045 3' -63 NC_002794.1 + 131865 0.66 0.690539
Target:  5'- ---aUCCCGACucuuGGGCgCCGCGGCc -3'
miRNA:   3'- gcagGGGGCUGuccuUCCG-GGCGCCG- -5'
11045 3' -63 NC_002794.1 + 99564 0.66 0.687723
Target:  5'- gCGcCCUCCGcgggcgagggggguGC-GGAGGGCgCgGCGGCg -3'
miRNA:   3'- -GCaGGGGGC--------------UGuCCUUCCG-GgCGCCG- -5'
11045 3' -63 NC_002794.1 + 58050 0.66 0.681137
Target:  5'- cCGU-CCCCGuCGGc--GGCCCcgGCGGCg -3'
miRNA:   3'- -GCAgGGGGCuGUCcuuCCGGG--CGCCG- -5'
11045 3' -63 NC_002794.1 + 153288 0.66 0.681137
Target:  5'- cCGUCgCCCGAgAcGcAGGCCggggaGCGGCu -3'
miRNA:   3'- -GCAGgGGGCUgUcCuUCCGGg----CGCCG- -5'
11045 3' -63 NC_002794.1 + 112202 0.66 0.681137
Target:  5'- aCGUCUgCCCGu--GGAGcacGGCCCGCuccagGGCg -3'
miRNA:   3'- -GCAGG-GGGCuguCCUU---CCGGGCG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.