miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11045 5' -51.3 NC_002794.1 + 138145 0.66 0.996741
Target:  5'- -gGCGGC-GGUU-UCUUgcgCaGCCGGCa -3'
miRNA:   3'- caUGCUGuCCAGaAGAAa--GaCGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 62500 0.66 0.996741
Target:  5'- -gACGGCGGG-CggCg--CcGCCGGCg -3'
miRNA:   3'- caUGCUGUCCaGaaGaaaGaCGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 103641 0.66 0.996524
Target:  5'- uGUACgggGACAGGUCgaggcaggCgUGCCGGUg -3'
miRNA:   3'- -CAUG---CUGUCCAGaagaaa--G-ACGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 107059 0.66 0.996176
Target:  5'- -gGCGGCGGGcgCggCg--CcGCCGGCa -3'
miRNA:   3'- caUGCUGUCCa-GaaGaaaGaCGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 147188 0.66 0.995535
Target:  5'- uGUGCGAguGGUUgaacUCUUgccgUCggGCCGGg -3'
miRNA:   3'- -CAUGCUguCCAGa---AGAA----AGa-CGGCCg -5'
11045 5' -51.3 NC_002794.1 + 100226 0.66 0.995535
Target:  5'- -gGCGuCgAGGUCUUCgag--GUCGGCg -3'
miRNA:   3'- caUGCuG-UCCAGAAGaaagaCGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 160955 0.66 0.993722
Target:  5'- aUAUGAC-GGUCUuuggaauaggugacUCggUUCUgGCCGGCc -3'
miRNA:   3'- cAUGCUGuCCAGA--------------AGa-AAGA-CGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 137345 0.67 0.993066
Target:  5'- -gACGGCucggcgucgucgGGGUCUUC-UUCgaGCCGGg -3'
miRNA:   3'- caUGCUG------------UCCAGAAGaAAGa-CGGCCg -5'
11045 5' -51.3 NC_002794.1 + 86981 0.67 0.993066
Target:  5'- cUGCGACgAGGUCcggcggCUUUC-GgCGGCg -3'
miRNA:   3'- cAUGCUG-UCCAGaa----GAAAGaCgGCCG- -5'
11045 5' -51.3 NC_002794.1 + 113938 0.67 0.993066
Target:  5'- -gGCGACGGGcCg-----CUGCCGGg -3'
miRNA:   3'- caUGCUGUCCaGaagaaaGACGGCCg -5'
11045 5' -51.3 NC_002794.1 + 137390 0.67 0.992035
Target:  5'- -gACG-CGGGUCcgg--UCUGuCCGGCg -3'
miRNA:   3'- caUGCuGUCCAGaagaaAGAC-GGCCG- -5'
11045 5' -51.3 NC_002794.1 + 58655 0.67 0.990887
Target:  5'- -gGCGACGGG-CUgCUgca-GCCGGCc -3'
miRNA:   3'- caUGCUGUCCaGAaGAaagaCGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 114621 0.68 0.985467
Target:  5'- -gGCGcaGCAGGUCcUCggcgcggagcucgagCUGCCGGUg -3'
miRNA:   3'- caUGC--UGUCCAGaAGaaa------------GACGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 110639 0.68 0.984939
Target:  5'- -gGCGGCgGGGUCgggUUUCU-CCGGCg -3'
miRNA:   3'- caUGCUG-UCCAGaagAAAGAcGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 11881 0.68 0.981031
Target:  5'- -cGCGACGGGUCcUCgagcgggUUCgugcucGCCGGg -3'
miRNA:   3'- caUGCUGUCCAGaAGa------AAGa-----CGGCCg -5'
11045 5' -51.3 NC_002794.1 + 107889 0.68 0.981031
Target:  5'- -cGCGGCGGGUg--Cgg-CUGCCGGg -3'
miRNA:   3'- caUGCUGUCCAgaaGaaaGACGGCCg -5'
11045 5' -51.3 NC_002794.1 + 39994 0.68 0.978814
Target:  5'- -gACGACAcGUUUaUUUUggggCUGCCGGCu -3'
miRNA:   3'- caUGCUGUcCAGA-AGAAa---GACGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 126409 0.69 0.971015
Target:  5'- -cGCGGC-GGUCgcgaUCUggCUGCUGGUc -3'
miRNA:   3'- caUGCUGuCCAGa---AGAaaGACGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 108540 0.69 0.971015
Target:  5'- --uCGGCAGcGUCaUCgaaCUGCCGGUg -3'
miRNA:   3'- cauGCUGUC-CAGaAGaaaGACGGCCG- -5'
11045 5' -51.3 NC_002794.1 + 116466 0.7 0.957672
Target:  5'- -aGCGGCcGGU--UCUUggUGCCGGCg -3'
miRNA:   3'- caUGCUGuCCAgaAGAAagACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.