miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11046 3' -54.7 NC_002794.1 + 14957 0.65 0.980845
Target:  5'- cCCGCCGccucgaaGCCGcGUAACGcGACGCGaccCGGc -3'
miRNA:   3'- -GGCGGC-------UGGCcUAUUGU-CUGCGU---GCU- -5'
11046 3' -54.7 NC_002794.1 + 85152 0.65 0.980845
Target:  5'- gCCGCCuucuagaGACCcGAUGugcgcggacACGGACGCcCGAc -3'
miRNA:   3'- -GGCGG-------CUGGcCUAU---------UGUCUGCGuGCU- -5'
11046 3' -54.7 NC_002794.1 + 56599 0.65 0.980845
Target:  5'- gCCGCCGGCCuccucauGGAgAACuGGACG-GCGGc -3'
miRNA:   3'- -GGCGGCUGG-------CCUaUUG-UCUGCgUGCU- -5'
11046 3' -54.7 NC_002794.1 + 125667 0.66 0.978928
Target:  5'- gCGCUGAaCGGGcucUGGCuGACGgGCGAc -3'
miRNA:   3'- gGCGGCUgGCCU---AUUGuCUGCgUGCU- -5'
11046 3' -54.7 NC_002794.1 + 47793 0.66 0.978928
Target:  5'- gCCGCaguacaCGGucUCGGcgAACAGGCGgACGAg -3'
miRNA:   3'- -GGCG------GCU--GGCCuaUUGUCUGCgUGCU- -5'
11046 3' -54.7 NC_002794.1 + 18804 0.66 0.978928
Target:  5'- cCCGCCGGCCaacGGGUcGGCGaccucGGCcgGCGCGGa -3'
miRNA:   3'- -GGCGGCUGG---CCUA-UUGU-----CUG--CGUGCU- -5'
11046 3' -54.7 NC_002794.1 + 12254 0.66 0.978928
Target:  5'- gCGCCGAuCCGGA--ACgAGACGUcucCGGg -3'
miRNA:   3'- gGCGGCU-GGCCUauUG-UCUGCGu--GCU- -5'
11046 3' -54.7 NC_002794.1 + 133536 0.66 0.978928
Target:  5'- -gGCCGACCGGGUAcgcguuguGCAc-CGuCACGGc -3'
miRNA:   3'- ggCGGCUGGCCUAU--------UGUcuGC-GUGCU- -5'
11046 3' -54.7 NC_002794.1 + 90389 0.66 0.978928
Target:  5'- cUCGCCGuCCGcGAU--CGGGCuGCACGu -3'
miRNA:   3'- -GGCGGCuGGC-CUAuuGUCUG-CGUGCu -5'
11046 3' -54.7 NC_002794.1 + 86575 0.66 0.978928
Target:  5'- gCGcCCGACCGGAUuuucCGGACcgaGC-CGGg -3'
miRNA:   3'- gGC-GGCUGGCCUAuu--GUCUG---CGuGCU- -5'
11046 3' -54.7 NC_002794.1 + 58367 0.66 0.978928
Target:  5'- gCGCCGcCCGacuuccAGgAGGCGCGCGGg -3'
miRNA:   3'- gGCGGCuGGCcua---UUgUCUGCGUGCU- -5'
11046 3' -54.7 NC_002794.1 + 191992 0.66 0.978928
Target:  5'- uCCGaCGGCCGGGacgguagcGGCGGugGcCGCGGc -3'
miRNA:   3'- -GGCgGCUGGCCUa-------UUGUCugC-GUGCU- -5'
11046 3' -54.7 NC_002794.1 + 82668 0.66 0.978928
Target:  5'- aCGCCGcGCCGG----CGGAuCGCACGc -3'
miRNA:   3'- gGCGGC-UGGCCuauuGUCU-GCGUGCu -5'
11046 3' -54.7 NC_002794.1 + 53248 0.66 0.978928
Target:  5'- cCCGCCGcGCCGGcguc--GcCGCGCGAc -3'
miRNA:   3'- -GGCGGC-UGGCCuauuguCuGCGUGCU- -5'
11046 3' -54.7 NC_002794.1 + 347 0.66 0.978928
Target:  5'- cCCGCgCGACggcagauuuucaCGGcaAACGGcCGCGCGAu -3'
miRNA:   3'- -GGCG-GCUG------------GCCuaUUGUCuGCGUGCU- -5'
11046 3' -54.7 NC_002794.1 + 179103 0.66 0.978928
Target:  5'- aCCGuCCGGucguCCGcGGUc-CGGGCGCGCGGu -3'
miRNA:   3'- -GGC-GGCU----GGC-CUAuuGUCUGCGUGCU- -5'
11046 3' -54.7 NC_002794.1 + 145550 0.66 0.978928
Target:  5'- cCCGagcggcCCGACCGGuucGCGGACGaGCGc -3'
miRNA:   3'- -GGC------GGCUGGCCuauUGUCUGCgUGCu -5'
11046 3' -54.7 NC_002794.1 + 38591 0.66 0.977573
Target:  5'- gCCGCCuccucccggacgagaGGCCGGA---CGGGCGCGuccCGAc -3'
miRNA:   3'- -GGCGG---------------CUGGCCUauuGUCUGCGU---GCU- -5'
11046 3' -54.7 NC_002794.1 + 18884 0.66 0.976872
Target:  5'- aCGCCGGCgCGGAgcgucaccccuccccGACGGcgcccggacugGCGCugGAu -3'
miRNA:   3'- gGCGGCUG-GCCUa--------------UUGUC-----------UGCGugCU- -5'
11046 3' -54.7 NC_002794.1 + 127130 0.66 0.976635
Target:  5'- gCCGCUGA-UGGAgacgAACGGcGCGgGCGAa -3'
miRNA:   3'- -GGCGGCUgGCCUa---UUGUC-UGCgUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.