miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11046 5' -57.4 NC_002794.1 + 79817 0.66 0.917083
Target:  5'- cGACCACGcCGaguggcgCCAGGUga--CGCCGa -3'
miRNA:   3'- -CUGGUGCaGCa------GGUCCAagagGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 117197 0.66 0.917083
Target:  5'- aGAUCgGCGUCGggcCCGGGcggCUCCgGCCGc -3'
miRNA:   3'- -CUGG-UGCAGCa--GGUCCaa-GAGG-CGGU- -5'
11046 5' -57.4 NC_002794.1 + 76948 0.66 0.911391
Target:  5'- cGACCGCGgagacgcCGUCCGGccggC-CCGCCGa -3'
miRNA:   3'- -CUGGUGCa------GCAGGUCcaa-GaGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 193426 0.66 0.905476
Target:  5'- cGCC-CGUCGUCCAGccgUCcggcacgCCGCCc -3'
miRNA:   3'- cUGGuGCAGCAGGUCca-AGa------GGCGGu -5'
11046 5' -57.4 NC_002794.1 + 11790 0.66 0.905476
Target:  5'- cGCCGCGgUGUCCGuGGcgCcgCCGCCGc -3'
miRNA:   3'- cUGGUGCaGCAGGU-CCaaGa-GGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 112228 0.66 0.892985
Target:  5'- -uCCAgGgCGUCCAGGg---CCGCCGc -3'
miRNA:   3'- cuGGUgCaGCAGGUCCaagaGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 189119 0.66 0.886414
Target:  5'- gGGCCAgGUgGUCCAaGUgCggggCCGCCAg -3'
miRNA:   3'- -CUGGUgCAgCAGGUcCAaGa---GGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 183331 0.66 0.886414
Target:  5'- --aCACGUCGcCCAGGUUCagcacguacagCgCGCCGg -3'
miRNA:   3'- cugGUGCAGCaGGUCCAAGa----------G-GCGGU- -5'
11046 5' -57.4 NC_002794.1 + 90748 0.67 0.879631
Target:  5'- cGACCGguCGUCGUCCGuGGccaUCgcgCCGCUg -3'
miRNA:   3'- -CUGGU--GCAGCAGGU-CCa--AGa--GGCGGu -5'
11046 5' -57.4 NC_002794.1 + 191546 0.67 0.879631
Target:  5'- cGCCGCaGUCGggUCCGGGUccacgacgccgCUUCGCCGa -3'
miRNA:   3'- cUGGUG-CAGC--AGGUCCAa----------GAGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 124404 0.67 0.879631
Target:  5'- cGCCG-GUCGUCgGGGcgCcgUCCGCCGc -3'
miRNA:   3'- cUGGUgCAGCAGgUCCaaG--AGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 140191 0.67 0.87264
Target:  5'- cGACgGCGUCGUCgAGGggCgacCCggGCCGg -3'
miRNA:   3'- -CUGgUGCAGCAGgUCCaaGa--GG--CGGU- -5'
11046 5' -57.4 NC_002794.1 + 193182 0.67 0.850469
Target:  5'- cGCCGCGccagcgUGUCCAGGUcgUgCGCCAc -3'
miRNA:   3'- cUGGUGCa-----GCAGGUCCAagAgGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 187314 0.67 0.850469
Target:  5'- uACCACGUCG-CgGGGUUCcgCaGCCGg -3'
miRNA:   3'- cUGGUGCAGCaGgUCCAAGa-GgCGGU- -5'
11046 5' -57.4 NC_002794.1 + 117770 0.68 0.834744
Target:  5'- --gCAgGUCGUCCagcaccGGGUUCauggUCCGCCGc -3'
miRNA:   3'- cugGUgCAGCAGG------UCCAAG----AGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 58002 0.68 0.834744
Target:  5'- aGGCCuuCGUCGccgCCGGGgccgCCGCCGg -3'
miRNA:   3'- -CUGGu-GCAGCa--GGUCCaagaGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 32659 0.68 0.834744
Target:  5'- cGACgGCGcCGUCCccGUcgUCCGCCAa -3'
miRNA:   3'- -CUGgUGCaGCAGGucCAagAGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 109269 0.68 0.826618
Target:  5'- uGACCACG--GUCUuGGagcUCUCCGCCGa -3'
miRNA:   3'- -CUGGUGCagCAGGuCCa--AGAGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 119763 0.68 0.826618
Target:  5'- gGACCAgGUCGcggccggccUCCAGGcggcUCcggUCCGCCGa -3'
miRNA:   3'- -CUGGUgCAGC---------AGGUCCa---AG---AGGCGGU- -5'
11046 5' -57.4 NC_002794.1 + 137347 0.68 0.818325
Target:  5'- cGGCUcgGCGUCGUCgGGGUcuUCUUCgaGCCGg -3'
miRNA:   3'- -CUGG--UGCAGCAGgUCCA--AGAGG--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.