miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 137987 0.66 0.81101
Target:  5'- cGCCGCAGcGCUggugcaGCUGGGcgcGCAGGUaCGc -3'
miRNA:   3'- aCGGCGUC-CGG------UGGUCCa--UGUCCA-GC- -5'
11047 3' -59.9 NC_002794.1 + 13163 0.66 0.81101
Target:  5'- aUGCCGCAcacccaCCACCAGGacgACucGUCGg -3'
miRNA:   3'- -ACGGCGUcc----GGUGGUCCa--UGucCAGC- -5'
11047 3' -59.9 NC_002794.1 + 142997 0.66 0.81101
Target:  5'- cGCCGU-GGCCAggaacccggUCAGcGUGC-GGUCGg -3'
miRNA:   3'- aCGGCGuCCGGU---------GGUC-CAUGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 117024 0.66 0.810165
Target:  5'- aGCCGCgccaccccGGGUccgacagCACgAGGUACGGGcCGu -3'
miRNA:   3'- aCGGCG--------UCCG-------GUGgUCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 19837 0.66 0.802497
Target:  5'- cUGCUGCAcGGCUACgGGGacUGCGuGUCGc -3'
miRNA:   3'- -ACGGCGU-CCGGUGgUCC--AUGUcCAGC- -5'
11047 3' -59.9 NC_002794.1 + 87166 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 87124 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 87208 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 92315 0.66 0.802497
Target:  5'- gGgCGCGGGCgGCgGGGgcccggGCGGG-CGg -3'
miRNA:   3'- aCgGCGUCCGgUGgUCCa-----UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 95837 0.66 0.802497
Target:  5'- aGCgGCGgcGGCgGCCGGGgaggcgGCGGG-CGg -3'
miRNA:   3'- aCGgCGU--CCGgUGGUCCa-----UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 107211 0.66 0.802497
Target:  5'- cGCC-CGGcGCCGCCGGGcggcgcgcgACGGGggCGg -3'
miRNA:   3'- aCGGcGUC-CGGUGGUCCa--------UGUCCa-GC- -5'
11047 3' -59.9 NC_002794.1 + 44645 0.66 0.802497
Target:  5'- cGCCGCAGGaUguUCGGucgACAGGUCc -3'
miRNA:   3'- aCGGCGUCC-GguGGUCca-UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 14765 0.66 0.793841
Target:  5'- aGCCGUcgAGGCCGCUgAGGccgGCgAGGcCGg -3'
miRNA:   3'- aCGGCG--UCCGGUGG-UCCa--UG-UCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 43615 0.66 0.793841
Target:  5'- gGCaGCAggacguGGCCGCCAGGaGCuGGUgGa -3'
miRNA:   3'- aCGgCGU------CCGGUGGUCCaUGuCCAgC- -5'
11047 3' -59.9 NC_002794.1 + 54154 0.66 0.793841
Target:  5'- aGCCGCGuccCCACCAGcGcGCAGGUg- -3'
miRNA:   3'- aCGGCGUcc-GGUGGUC-CaUGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 115948 0.66 0.788581
Target:  5'- cGCCGCGuGUCGCCGGGgaccgugggggggaGCGGGaCGg -3'
miRNA:   3'- aCGGCGUcCGGUGGUCCa-------------UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 189072 0.66 0.785049
Target:  5'- cGUCuCGGGCCGCC-GGUACAGacacUCGc -3'
miRNA:   3'- aCGGcGUCCGGUGGuCCAUGUCc---AGC- -5'
11047 3' -59.9 NC_002794.1 + 93471 0.66 0.77613
Target:  5'- cGCCGCAcguGGCCACCuucucGCGGGagUCGc -3'
miRNA:   3'- aCGGCGU---CCGGUGGucca-UGUCC--AGC- -5'
11047 3' -59.9 NC_002794.1 + 87082 0.66 0.77613
Target:  5'- cGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 103454 0.66 0.773431
Target:  5'- aGCUGCGGcugguugauggacaGCCGCagCAGGUcCAGGUCc -3'
miRNA:   3'- aCGGCGUC--------------CGGUG--GUCCAuGUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.