miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 92315 0.66 0.802497
Target:  5'- gGgCGCGGGCgGCgGGGgcccggGCGGG-CGg -3'
miRNA:   3'- aCgGCGUCCGgUGgUCCa-----UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 87208 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 87124 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 116406 0.67 0.729905
Target:  5'- gUGUgGCGGGgcgcgagCACCAGGgcGCGGGUCa -3'
miRNA:   3'- -ACGgCGUCCg------GUGGUCCa-UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 182553 0.67 0.728957
Target:  5'- cGCCGCGGccggcaccGUCACCGGGaucuccgUGCGGG-CGa -3'
miRNA:   3'- aCGGCGUC--------CGGUGGUCC-------AUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 152580 0.67 0.720392
Target:  5'- cGCCGCGgcGGCCGCCAcgucccugcGGcGCGGGcCc -3'
miRNA:   3'- aCGGCGU--CCGGUGGU---------CCaUGUCCaGc -5'
11047 3' -59.9 NC_002794.1 + 48873 0.67 0.720392
Target:  5'- -cCCGUcGGCgGCCAGGUgGCAGGcCa -3'
miRNA:   3'- acGGCGuCCGgUGGUCCA-UGUCCaGc -5'
11047 3' -59.9 NC_002794.1 + 134173 0.67 0.720392
Target:  5'- gGCCGCGcggauGGCCACCucguaucggcuGGUGgGGGcCGu -3'
miRNA:   3'- aCGGCGU-----CCGGUGGu----------CCAUgUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 139908 0.67 0.720392
Target:  5'- aGCCGCAGGCCGUCGGacggcacGCAGcuGUCGu -3'
miRNA:   3'- aCGGCGUCCGGUGGUCca-----UGUC--CAGC- -5'
11047 3' -59.9 NC_002794.1 + 139685 0.67 0.720392
Target:  5'- aGCCGCcGGCCguGCCGG--ACAGGUa- -3'
miRNA:   3'- aCGGCGuCCGG--UGGUCcaUGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 52952 0.67 0.729905
Target:  5'- aGCCcaGCAGGUCcucgGCCAGGUGCucGGccUCGu -3'
miRNA:   3'- aCGG--CGUCCGG----UGGUCCAUGu-CC--AGC- -5'
11047 3' -59.9 NC_002794.1 + 136453 0.67 0.733689
Target:  5'- cGCUGUugggucaggucggcgAGGuUCGCCGcGUACAGGUCGa -3'
miRNA:   3'- aCGGCG---------------UCC-GGUGGUcCAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 189407 0.67 0.729905
Target:  5'- aGuCCGCcaGGGCCAgCGGGUucugcugccGCAGGUa- -3'
miRNA:   3'- aC-GGCG--UCCGGUgGUCCA---------UGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 34704 0.67 0.73934
Target:  5'- cGCCaGCAGGcCCGCCggcgccacgAGGcGCGGG-CGg -3'
miRNA:   3'- aCGG-CGUCC-GGUGG---------UCCaUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 37330 0.67 0.748688
Target:  5'- aGCgGUGGGgC-CCGGGcggcaGCAGGUCGg -3'
miRNA:   3'- aCGgCGUCCgGuGGUCCa----UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 104303 0.67 0.747758
Target:  5'- gGCCGgGugcacuugagguuGGCCGCgCA-GUACGGGUCGc -3'
miRNA:   3'- aCGGCgU-------------CCGGUG-GUcCAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 115595 0.67 0.748688
Target:  5'- gGCUGCGGucgacccgcucGCCcggcGCCGGGagGCGGGUCa -3'
miRNA:   3'- aCGGCGUC-----------CGG----UGGUCCa-UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 113615 0.67 0.757942
Target:  5'- cGCCGCG----GCCAGGUuCAGGUUGa -3'
miRNA:   3'- aCGGCGUccggUGGUCCAuGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 105961 0.67 0.757021
Target:  5'- gGCUGgGGGCCGCCGcGG-ACGaguuuccGGUCGc -3'
miRNA:   3'- aCGGCgUCCGGUGGU-CCaUGU-------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 122979 0.67 0.720392
Target:  5'- gGCUGUAcGCgCGCCuGGUGCGGGcCGu -3'
miRNA:   3'- aCGGCGUcCG-GUGGuCCAUGUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.