Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 115595 | 0.67 | 0.748688 |
Target: 5'- gGCUGCGGucgacccgcucGCCcggcGCCGGGagGCGGGUCa -3' miRNA: 3'- aCGGCGUC-----------CGG----UGGUCCa-UGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 104303 | 0.67 | 0.747758 |
Target: 5'- gGCCGgGugcacuugagguuGGCCGCgCA-GUACGGGUCGc -3' miRNA: 3'- aCGGCgU-------------CCGGUG-GUcCAUGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 37330 | 0.67 | 0.748688 |
Target: 5'- aGCgGUGGGgC-CCGGGcggcaGCAGGUCGg -3' miRNA: 3'- aCGgCGUCCgGuGGUCCa----UGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 34704 | 0.67 | 0.73934 |
Target: 5'- cGCCaGCAGGcCCGCCggcgccacgAGGcGCGGG-CGg -3' miRNA: 3'- aCGG-CGUCC-GGUGG---------UCCaUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 189407 | 0.67 | 0.729905 |
Target: 5'- aGuCCGCcaGGGCCAgCGGGUucugcugccGCAGGUa- -3' miRNA: 3'- aC-GGCG--UCCGGUgGUCCA---------UGUCCAgc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 136453 | 0.67 | 0.733689 |
Target: 5'- cGCUGUugggucaggucggcgAGGuUCGCCGcGUACAGGUCGa -3' miRNA: 3'- aCGGCG---------------UCC-GGUGGUcCAUGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 52952 | 0.67 | 0.729905 |
Target: 5'- aGCCcaGCAGGUCcucgGCCAGGUGCucGGccUCGu -3' miRNA: 3'- aCGG--CGUCCGG----UGGUCCAUGu-CC--AGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 116406 | 0.67 | 0.729905 |
Target: 5'- gUGUgGCGGGgcgcgagCACCAGGgcGCGGGUCa -3' miRNA: 3'- -ACGgCGUCCg------GUGGUCCa-UGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 182553 | 0.67 | 0.728957 |
Target: 5'- cGCCGCGGccggcaccGUCACCGGGaucuccgUGCGGG-CGa -3' miRNA: 3'- aCGGCGUC--------CGGUGGUCC-------AUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 188975 | 0.68 | 0.684646 |
Target: 5'- cGCCGCccagcucGGCCACCAGccagcggcagcucucCAGGUCGc -3' miRNA: 3'- aCGGCGu------CCGGUGGUCcau------------GUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 143690 | 0.68 | 0.691463 |
Target: 5'- cUGCCGCAGGgucgcguugcCCACCGcGGgccccgGCGGG-CGu -3' miRNA: 3'- -ACGGCGUCC----------GGUGGU-CCa-----UGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 49457 | 0.68 | 0.681717 |
Target: 5'- cGCCGUGGcGCCGCCGugaccGGccgccGCGGGUCu -3' miRNA: 3'- aCGGCGUC-CGGUGGU-----CCa----UGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 153659 | 0.68 | 0.681717 |
Target: 5'- cGCCGCGuccGGCCGCCGGuuGUG-AGGcUCGa -3' miRNA: 3'- aCGGCGU---CCGGUGGUC--CAUgUCC-AGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 34258 | 0.68 | 0.691463 |
Target: 5'- cGCCGCAGGCgGaCCGcGcGCAGG-CGg -3' miRNA: 3'- aCGGCGUCCGgU-GGUcCaUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 113884 | 0.68 | 0.698258 |
Target: 5'- gGCCGCGgcgcgcgucggcgcGGUCugCAGGaaggccucCAGGUCGg -3' miRNA: 3'- aCGGCGU--------------CCGGugGUCCau------GUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 81811 | 0.68 | 0.698258 |
Target: 5'- aGCCGC--GCgCACCGcaucccgcaagaacGGUGCAGGUCu -3' miRNA: 3'- aCGGCGucCG-GUGGU--------------CCAUGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 47592 | 0.68 | 0.691463 |
Target: 5'- cUGCCGCccGaUCGCCAGGguCAGGUCu -3' miRNA: 3'- -ACGGCGucC-GGUGGUCCauGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 16216 | 0.68 | 0.701163 |
Target: 5'- gGUCG-AGGuCCGgCGGGU-CAGGUCGg -3' miRNA: 3'- aCGGCgUCC-GGUgGUCCAuGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 56256 | 0.68 | 0.701163 |
Target: 5'- aGCaggGCAcGGCCACCGGGccgagcaGCAGG-CGg -3' miRNA: 3'- aCGg--CGU-CCGGUGGUCCa------UGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 55638 | 0.68 | 0.681717 |
Target: 5'- aGCaCGCGGGCCGgCAGGcGCAGcccCGa -3' miRNA: 3'- aCG-GCGUCCGGUgGUCCaUGUCca-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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