Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 102081 | 0.84 | 0.083656 |
Target: 5'- cUGCCGCGGGCCGacgagccgccgcCCAcGGUGCGGGUCa -3' miRNA: 3'- -ACGGCGUCCGGU------------GGU-CCAUGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 195029 | 0.8 | 0.158505 |
Target: 5'- aGUCGCGcGCCGCCAGGUgcaucgucgucgucgACAGGUCGa -3' miRNA: 3'- aCGGCGUcCGGUGGUCCA---------------UGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 71067 | 0.77 | 0.230607 |
Target: 5'- cGCCGCAGcaGCCGCCGGGUccagacgaacaGCcGGUCGc -3' miRNA: 3'- aCGGCGUC--CGGUGGUCCA-----------UGuCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 185270 | 0.76 | 0.258994 |
Target: 5'- cGCCGCcggccgaguGGGCCGCCGG--ACAGGUCa -3' miRNA: 3'- aCGGCG---------UCCGGUGGUCcaUGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 101005 | 0.76 | 0.267438 |
Target: 5'- cUGCCGCGGGCCuuccugucgggggacGcgggCCGGGcGCGGGUCGg -3' miRNA: 3'- -ACGGCGUCCGG---------------U----GGUCCaUGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 143035 | 0.76 | 0.271124 |
Target: 5'- gGUCGacgugcaGGGCCGCCAGGUugAGGcCGu -3' miRNA: 3'- aCGGCg------UCCGGUGGUCCAugUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 141654 | 0.76 | 0.258994 |
Target: 5'- gGCCGC-GGCCGCCggcGGGUcgagcgaagACGGGUCGc -3' miRNA: 3'- aCGGCGuCCGGUGG---UCCA---------UGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 36354 | 0.75 | 0.292787 |
Target: 5'- gGCgUGCGcGGCCACCGGGUGCGcgcccgcggcgaagcGGUCGa -3' miRNA: 3'- aCG-GCGU-CCGGUGGUCCAUGU---------------CCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 30889 | 0.75 | 0.310249 |
Target: 5'- aGCuCGCuGGCCACCAGcagcucCAGGUCGg -3' miRNA: 3'- aCG-GCGuCCGGUGGUCcau---GUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 33121 | 0.74 | 0.346026 |
Target: 5'- gGCCGCGGGCagacgaucCACCAGGUgcuGCGGGa-- -3' miRNA: 3'- aCGGCGUCCG--------GUGGUCCA---UGUCCagc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 41824 | 0.74 | 0.36887 |
Target: 5'- cGCCcaGCAGGCC-CguGGU-CGGGUCGa -3' miRNA: 3'- aCGG--CGUCCGGuGguCCAuGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 193201 | 0.74 | 0.371993 |
Target: 5'- gGUCGUGcGCCACCAGGUACAgcacgcuucgcucguGGUCGu -3' miRNA: 3'- aCGGCGUcCGGUGGUCCAUGU---------------CCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 41856 | 0.73 | 0.384664 |
Target: 5'- aGCCcCAGGCCGCCGGGca-GGGcCGg -3' miRNA: 3'- aCGGcGUCCGGUGGUCCaugUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 114341 | 0.73 | 0.376712 |
Target: 5'- cGCCGCAGcggcucguccGCCGCCAGGgccggcUGCAGGgccgCGu -3' miRNA: 3'- aCGGCGUC----------CGGUGGUCC------AUGUCCa---GC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 50520 | 0.73 | 0.409179 |
Target: 5'- aGCuCGCAGGUCAaCGGGUuguACAGGUUGc -3' miRNA: 3'- aCG-GCGUCCGGUgGUCCA---UGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 116360 | 0.72 | 0.461006 |
Target: 5'- gGCCGCGcGGuCCgACCGGucgguggcGUGCGGGUCGa -3' miRNA: 3'- aCGGCGU-CC-GG-UGGUC--------CAUGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 182735 | 0.72 | 0.469979 |
Target: 5'- cUGCCGC-GGCC-CCAgaaagacgcGGUACAGGUa- -3' miRNA: 3'- -ACGGCGuCCGGuGGU---------CCAUGUCCAgc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 120111 | 0.71 | 0.529344 |
Target: 5'- cGCCGCGcgugacgcgcgcgacGGCgACCGGGgACGGGcCGg -3' miRNA: 3'- aCGGCGU---------------CCGgUGGUCCaUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 11531 | 0.71 | 0.50672 |
Target: 5'- aGCUGCGGGCgACCgAGGaccgcgGCuGGUCGc -3' miRNA: 3'- aCGGCGUCCGgUGG-UCCa-----UGuCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 61966 | 0.71 | 0.488187 |
Target: 5'- gGCCaGC-GGCCGCCuGcUGCAGGUCa -3' miRNA: 3'- aCGG-CGuCCGGUGGuCcAUGUCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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