miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 102081 0.84 0.083656
Target:  5'- cUGCCGCGGGCCGacgagccgccgcCCAcGGUGCGGGUCa -3'
miRNA:   3'- -ACGGCGUCCGGU------------GGU-CCAUGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 195029 0.8 0.158505
Target:  5'- aGUCGCGcGCCGCCAGGUgcaucgucgucgucgACAGGUCGa -3'
miRNA:   3'- aCGGCGUcCGGUGGUCCA---------------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 71067 0.77 0.230607
Target:  5'- cGCCGCAGcaGCCGCCGGGUccagacgaacaGCcGGUCGc -3'
miRNA:   3'- aCGGCGUC--CGGUGGUCCA-----------UGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 185270 0.76 0.258994
Target:  5'- cGCCGCcggccgaguGGGCCGCCGG--ACAGGUCa -3'
miRNA:   3'- aCGGCG---------UCCGGUGGUCcaUGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 141654 0.76 0.258994
Target:  5'- gGCCGC-GGCCGCCggcGGGUcgagcgaagACGGGUCGc -3'
miRNA:   3'- aCGGCGuCCGGUGG---UCCA---------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 101005 0.76 0.267438
Target:  5'- cUGCCGCGGGCCuuccugucgggggacGcgggCCGGGcGCGGGUCGg -3'
miRNA:   3'- -ACGGCGUCCGG---------------U----GGUCCaUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 143035 0.76 0.271124
Target:  5'- gGUCGacgugcaGGGCCGCCAGGUugAGGcCGu -3'
miRNA:   3'- aCGGCg------UCCGGUGGUCCAugUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 36354 0.75 0.292787
Target:  5'- gGCgUGCGcGGCCACCGGGUGCGcgcccgcggcgaagcGGUCGa -3'
miRNA:   3'- aCG-GCGU-CCGGUGGUCCAUGU---------------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 30889 0.75 0.310249
Target:  5'- aGCuCGCuGGCCACCAGcagcucCAGGUCGg -3'
miRNA:   3'- aCG-GCGuCCGGUGGUCcau---GUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 33121 0.74 0.346026
Target:  5'- gGCCGCGGGCagacgaucCACCAGGUgcuGCGGGa-- -3'
miRNA:   3'- aCGGCGUCCG--------GUGGUCCA---UGUCCagc -5'
11047 3' -59.9 NC_002794.1 + 41824 0.74 0.36887
Target:  5'- cGCCcaGCAGGCC-CguGGU-CGGGUCGa -3'
miRNA:   3'- aCGG--CGUCCGGuGguCCAuGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 193201 0.74 0.371993
Target:  5'- gGUCGUGcGCCACCAGGUACAgcacgcuucgcucguGGUCGu -3'
miRNA:   3'- aCGGCGUcCGGUGGUCCAUGU---------------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 114341 0.73 0.376712
Target:  5'- cGCCGCAGcggcucguccGCCGCCAGGgccggcUGCAGGgccgCGu -3'
miRNA:   3'- aCGGCGUC----------CGGUGGUCC------AUGUCCa---GC- -5'
11047 3' -59.9 NC_002794.1 + 41856 0.73 0.384664
Target:  5'- aGCCcCAGGCCGCCGGGca-GGGcCGg -3'
miRNA:   3'- aCGGcGUCCGGUGGUCCaugUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 50520 0.73 0.409179
Target:  5'- aGCuCGCAGGUCAaCGGGUuguACAGGUUGc -3'
miRNA:   3'- aCG-GCGUCCGGUgGUCCA---UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 116360 0.72 0.461006
Target:  5'- gGCCGCGcGGuCCgACCGGucgguggcGUGCGGGUCGa -3'
miRNA:   3'- aCGGCGU-CC-GG-UGGUC--------CAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 182735 0.72 0.469979
Target:  5'- cUGCCGC-GGCC-CCAgaaagacgcGGUACAGGUa- -3'
miRNA:   3'- -ACGGCGuCCGGuGGU---------CCAUGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 182147 0.71 0.479041
Target:  5'- cGUCGCacGGGCaGCuCAGGUuCAGGUCGg -3'
miRNA:   3'- aCGGCG--UCCGgUG-GUCCAuGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 149695 0.71 0.488187
Target:  5'- gGCCGCggGGGCCGCCug--GCGGGUgGg -3'
miRNA:   3'- aCGGCG--UCCGGUGGuccaUGUCCAgC- -5'
11047 3' -59.9 NC_002794.1 + 61966 0.71 0.488187
Target:  5'- gGCCaGC-GGCCGCCuGcUGCAGGUCa -3'
miRNA:   3'- aCGG-CGuCCGGUGGuCcAUGUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.