miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 125357 0.71 0.497415
Target:  5'- aGCCGCuGGCCGUCAGcaACAGcGUCGa -3'
miRNA:   3'- aCGGCGuCCGGUGGUCcaUGUC-CAGC- -5'
11047 3' -59.9 NC_002794.1 + 151210 0.71 0.50672
Target:  5'- cGCCGCcGGCUACCGGGUcuugggcCAGGg-- -3'
miRNA:   3'- aCGGCGuCCGGUGGUCCAu------GUCCagc -5'
11047 3' -59.9 NC_002794.1 + 11531 0.71 0.50672
Target:  5'- aGCUGCGGGCgACCgAGGaccgcgGCuGGUCGc -3'
miRNA:   3'- aCGGCGUCCGgUGG-UCCa-----UGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 190883 0.71 0.50672
Target:  5'- gGCUGCcGuGCC-CCAGGUACAGGa-- -3'
miRNA:   3'- aCGGCGuC-CGGuGGUCCAUGUCCagc -5'
11047 3' -59.9 NC_002794.1 + 152164 0.71 0.515158
Target:  5'- cGCCuGCGGGCCGCCGaccuGUGCAgcuaccugaacacGGUCGc -3'
miRNA:   3'- aCGG-CGUCCGGUGGUc---CAUGU-------------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 187076 0.71 0.525547
Target:  5'- gUGCCGCAGGCUgcucGCCAcguGGaACAGcccGUCGg -3'
miRNA:   3'- -ACGGCGUCCGG----UGGU---CCaUGUC---CAGC- -5'
11047 3' -59.9 NC_002794.1 + 55989 0.71 0.525547
Target:  5'- aGCCGCGGGCgagCACCAGcaugACGuagcGGUCGg -3'
miRNA:   3'- aCGGCGUCCG---GUGGUCca--UGU----CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 120111 0.71 0.529344
Target:  5'- cGCCGCGcgugacgcgcgcgacGGCgACCGGGgACGGGcCGg -3'
miRNA:   3'- aCGGCGU---------------CCGgUGGUCCaUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 117369 0.7 0.535059
Target:  5'- aGCgGCGGGCCGCC---UGCAcGGUCGc -3'
miRNA:   3'- aCGgCGUCCGGUGGuccAUGU-CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 148133 0.7 0.535059
Target:  5'- gGgCGCgGGGCCGCCGGGgcgaggGC-GGUCGc -3'
miRNA:   3'- aCgGCG-UCCGGUGGUCCa-----UGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 133524 0.7 0.544632
Target:  5'- gGCCGUugaguuGGCCgACCGGGUACGcGUUGu -3'
miRNA:   3'- aCGGCGu-----CCGG-UGGUCCAUGUcCAGC- -5'
11047 3' -59.9 NC_002794.1 + 140650 0.7 0.548476
Target:  5'- cGUCGUGGGCUGCgcgcagcuuuuggguCGGGcGCAGGUCGg -3'
miRNA:   3'- aCGGCGUCCGGUG---------------GUCCaUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 111628 0.7 0.563936
Target:  5'- cGCCGC-GGCCGCCGccGGU-CGGG-CGc -3'
miRNA:   3'- aCGGCGuCCGGUGGU--CCAuGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 113376 0.7 0.563936
Target:  5'- gGgUGCGGGCCGCCGucGUGCAGG-CGc -3'
miRNA:   3'- aCgGCGUCCGGUGGUc-CAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 182034 0.7 0.563936
Target:  5'- gGCCGCcGGCgACCAGac-CAGGUCc -3'
miRNA:   3'- aCGGCGuCCGgUGGUCcauGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 190595 0.7 0.583416
Target:  5'- cGCCGCAGcuCCuCCAGGUccgcgacagccGCAGGuUCGa -3'
miRNA:   3'- aCGGCGUCc-GGuGGUCCA-----------UGUCC-AGC- -5'
11047 3' -59.9 NC_002794.1 + 119132 0.7 0.583416
Target:  5'- gGCCugGCAGGCguUCGGGUggucgcgcaGCAGGUCc -3'
miRNA:   3'- aCGG--CGUCCGguGGUCCA---------UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 154408 0.69 0.591247
Target:  5'- gUGCCGguGGCCAgCGcucgcauccgACAGGUCGc -3'
miRNA:   3'- -ACGGCguCCGGUgGUcca-------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 54874 0.69 0.603027
Target:  5'- cGCCGCAGcGUCGCCuuAGGUugAugacccGGUUGg -3'
miRNA:   3'- aCGGCGUC-CGGUGG--UCCAugU------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 151644 0.69 0.620746
Target:  5'- cGCCGCcGGCCggcacuuggcucgccGCCGGGUGacgaccgaggguacuUGGGUCGc -3'
miRNA:   3'- aCGGCGuCCGG---------------UGGUCCAU---------------GUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.