miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 94012 0.69 0.621732
Target:  5'- gGCgGCGGGCCGgCGGGUuccgccgGCGGGccCGa -3'
miRNA:   3'- aCGgCGUCCGGUgGUCCA-------UGUCCa-GC- -5'
11047 3' -59.9 NC_002794.1 + 38007 0.69 0.622717
Target:  5'- cGCCGUAGGCCugCAGcGcuuCGGGa-- -3'
miRNA:   3'- aCGGCGUCCGGugGUC-Cau-GUCCagc -5'
11047 3' -59.9 NC_002794.1 + 132100 0.69 0.632576
Target:  5'- cGCCGUucgAGuGCCAUgGGGUGgAcGGUCGg -3'
miRNA:   3'- aCGGCG---UC-CGGUGgUCCAUgU-CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 110625 0.69 0.632576
Target:  5'- aGCCGCGGcGCCGCgGcGGcg-GGGUCGg -3'
miRNA:   3'- aCGGCGUC-CGGUGgU-CCaugUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 186203 0.69 0.63652
Target:  5'- -aCCGCGGGCC-CCAGGgcagauggcggucCGGGUCc -3'
miRNA:   3'- acGGCGUCCGGuGGUCCau-----------GUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 104446 0.69 0.639477
Target:  5'- cGCCGCGGGCgGCCcGagcccgggcggcguGUGCAGGaugCGg -3'
miRNA:   3'- aCGGCGUCCGgUGGuC--------------CAUGUCCa--GC- -5'
11047 3' -59.9 NC_002794.1 + 156415 0.69 0.642434
Target:  5'- gGCCGCGgccacGGCCGgCGGGUgagagACcGGUCGc -3'
miRNA:   3'- aCGGCGU-----CCGGUgGUCCA-----UGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 142739 0.68 0.6513
Target:  5'- --aCGCAGGCCgagcuugACCAGGUGCuuGGUg- -3'
miRNA:   3'- acgGCGUCCGG-------UGGUCCAUGu-CCAgc -5'
11047 3' -59.9 NC_002794.1 + 129997 0.68 0.652285
Target:  5'- cGUCGaacGGCC-CCGGagcGUGCGGGUCGg -3'
miRNA:   3'- aCGGCgu-CCGGuGGUC---CAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 188144 0.68 0.652285
Target:  5'- aGCUcuuccucCAGGUCgGCCGGGUcggACAGGUCGg -3'
miRNA:   3'- aCGGc------GUCCGG-UGGUCCA---UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 96090 0.68 0.662121
Target:  5'- cGCCGaCGGGCgUACCuGGaaaGGGUCGa -3'
miRNA:   3'- aCGGC-GUCCG-GUGGuCCaugUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 181587 0.68 0.662121
Target:  5'- gGCUGCGGGCCGCgAc---CGGGUCGc -3'
miRNA:   3'- aCGGCGUCCGGUGgUccauGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 95772 0.68 0.662121
Target:  5'- gGCCGCGacGGCgGCCGGGgcgAgAGGcgCGg -3'
miRNA:   3'- aCGGCGU--CCGgUGGUCCa--UgUCCa-GC- -5'
11047 3' -59.9 NC_002794.1 + 36960 0.68 0.671934
Target:  5'- gGCgGCAGGCaguCGCgCAGGaggaucgcgcGCAGGUCGg -3'
miRNA:   3'- aCGgCGUCCG---GUG-GUCCa---------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 101583 0.68 0.671934
Target:  5'- gGCCGCc-GCgGCCGGGgggGCGGGUg- -3'
miRNA:   3'- aCGGCGucCGgUGGUCCa--UGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 143490 0.68 0.678786
Target:  5'- aUGUCGCuGGCCGCgGGGcUGCAGaugaggaagcgcacGUCGc -3'
miRNA:   3'- -ACGGCGuCCGGUGgUCC-AUGUC--------------CAGC- -5'
11047 3' -59.9 NC_002794.1 + 181540 0.68 0.680741
Target:  5'- cGCCgGCGGGCCggcgcucucggucGCCGGGccaauCAGGaUCGa -3'
miRNA:   3'- aCGG-CGUCCGG-------------UGGUCCau---GUCC-AGC- -5'
11047 3' -59.9 NC_002794.1 + 52864 0.68 0.681717
Target:  5'- gGCCGC-GGCCuuCC-GGUACacccgauggugGGGUCGa -3'
miRNA:   3'- aCGGCGuCCGGu-GGuCCAUG-----------UCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 49457 0.68 0.681717
Target:  5'- cGCCGUGGcGCCGCCGugaccGGccgccGCGGGUCu -3'
miRNA:   3'- aCGGCGUC-CGGUGGU-----CCa----UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 153659 0.68 0.681717
Target:  5'- cGCCGCGuccGGCCGCCGGuuGUG-AGGcUCGa -3'
miRNA:   3'- aCGGCGU---CCGGUGGUC--CAUgUCC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.