Results 61 - 80 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 153659 | 0.68 | 0.681717 |
Target: 5'- cGCCGCGuccGGCCGCCGGuuGUG-AGGcUCGa -3' miRNA: 3'- aCGGCGU---CCGGUGGUC--CAUgUCC-AGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 49457 | 0.68 | 0.681717 |
Target: 5'- cGCCGUGGcGCCGCCGugaccGGccgccGCGGGUCu -3' miRNA: 3'- aCGGCGUC-CGGUGGU-----CCa----UGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 188975 | 0.68 | 0.684646 |
Target: 5'- cGCCGCccagcucGGCCACCAGccagcggcagcucucCAGGUCGc -3' miRNA: 3'- aCGGCGu------CCGGUGGUCcau------------GUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 143690 | 0.68 | 0.691463 |
Target: 5'- cUGCCGCAGGgucgcguugcCCACCGcGGgccccgGCGGG-CGu -3' miRNA: 3'- -ACGGCGUCC----------GGUGGU-CCa-----UGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 34258 | 0.68 | 0.691463 |
Target: 5'- cGCCGCAGGCgGaCCGcGcGCAGG-CGg -3' miRNA: 3'- aCGGCGUCCGgU-GGUcCaUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 47592 | 0.68 | 0.691463 |
Target: 5'- cUGCCGCccGaUCGCCAGGguCAGGUCu -3' miRNA: 3'- -ACGGCGucC-GGUGGUCCauGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 113884 | 0.68 | 0.698258 |
Target: 5'- gGCCGCGgcgcgcgucggcgcGGUCugCAGGaaggccucCAGGUCGg -3' miRNA: 3'- aCGGCGU--------------CCGGugGUCCau------GUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 81811 | 0.68 | 0.698258 |
Target: 5'- aGCCGC--GCgCACCGcaucccgcaagaacGGUGCAGGUCu -3' miRNA: 3'- aCGGCGucCG-GUGGU--------------CCAUGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 118881 | 0.68 | 0.701163 |
Target: 5'- aGCUGCAGGUCgGCCcGGUGuucgcgUAGGUCc -3' miRNA: 3'- aCGGCGUCCGG-UGGuCCAU------GUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 16216 | 0.68 | 0.701163 |
Target: 5'- gGUCG-AGGuCCGgCGGGU-CAGGUCGg -3' miRNA: 3'- aCGGCgUCC-GGUgGUCCAuGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 56256 | 0.68 | 0.701163 |
Target: 5'- aGCaggGCAcGGCCACCGGGccgagcaGCAGG-CGg -3' miRNA: 3'- aCGg--CGU-CCGGUGGUCCa------UGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 86823 | 0.67 | 0.710808 |
Target: 5'- gGCCGCGaccUCGCCGGGauCGGGUCGg -3' miRNA: 3'- aCGGCGUcc-GGUGGUCCauGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 137568 | 0.67 | 0.710808 |
Target: 5'- cGCCGCcgucGCCGCCGGGgcCGGaGUgCGg -3' miRNA: 3'- aCGGCGuc--CGGUGGUCCauGUC-CA-GC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 32595 | 0.67 | 0.710808 |
Target: 5'- gGCCG-GGGCCgggGCCGGGgcCGGGgaUCGg -3' miRNA: 3'- aCGGCgUCCGG---UGGUCCauGUCC--AGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 36779 | 0.67 | 0.710808 |
Target: 5'- aGCUGUAgccGGCCGCCGuGUACgccgAGGUCa -3' miRNA: 3'- aCGGCGU---CCGGUGGUcCAUG----UCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 34486 | 0.67 | 0.710808 |
Target: 5'- aGCUGC--GCCGCCAGGUGaccaacCAGGgcgCGg -3' miRNA: 3'- aCGGCGucCGGUGGUCCAU------GUCCa--GC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 135534 | 0.67 | 0.717524 |
Target: 5'- cGCCGCucGGUCGCCgaccgaccgaauagGGGcGCAGGcCGg -3' miRNA: 3'- aCGGCGu-CCGGUGG--------------UCCaUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 116090 | 0.67 | 0.720392 |
Target: 5'- cGCgGCGGucGUCGCCGGGgucgAGGUCGa -3' miRNA: 3'- aCGgCGUC--CGGUGGUCCaug-UCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 87271 | 0.67 | 0.720392 |
Target: 5'- gGgUGCAGGCCgGgCGGGUGgGGGUgGg -3' miRNA: 3'- aCgGCGUCCGG-UgGUCCAUgUCCAgC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 122979 | 0.67 | 0.720392 |
Target: 5'- gGCUGUAcGCgCGCCuGGUGCGGGcCGu -3' miRNA: 3'- aCGGCGUcCG-GUGGuCCAUGUCCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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