miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 134173 0.67 0.720392
Target:  5'- gGCCGCGcggauGGCCACCucguaucggcuGGUGgGGGcCGu -3'
miRNA:   3'- aCGGCGU-----CCGGUGGu----------CCAUgUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 48873 0.67 0.720392
Target:  5'- -cCCGUcGGCgGCCAGGUgGCAGGcCa -3'
miRNA:   3'- acGGCGuCCGgUGGUCCA-UGUCCaGc -5'
11047 3' -59.9 NC_002794.1 + 152580 0.67 0.720392
Target:  5'- cGCCGCGgcGGCCGCCAcgucccugcGGcGCGGGcCc -3'
miRNA:   3'- aCGGCGU--CCGGUGGU---------CCaUGUCCaGc -5'
11047 3' -59.9 NC_002794.1 + 135534 0.67 0.717524
Target:  5'- cGCCGCucGGUCGCCgaccgaccgaauagGGGcGCAGGcCGg -3'
miRNA:   3'- aCGGCGu-CCGGUGG--------------UCCaUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 36779 0.67 0.710808
Target:  5'- aGCUGUAgccGGCCGCCGuGUACgccgAGGUCa -3'
miRNA:   3'- aCGGCGU---CCGGUGGUcCAUG----UCCAGc -5'
11047 3' -59.9 NC_002794.1 + 32595 0.67 0.710808
Target:  5'- gGCCG-GGGCCgggGCCGGGgcCGGGgaUCGg -3'
miRNA:   3'- aCGGCgUCCGG---UGGUCCauGUCC--AGC- -5'
11047 3' -59.9 NC_002794.1 + 137568 0.67 0.710808
Target:  5'- cGCCGCcgucGCCGCCGGGgcCGGaGUgCGg -3'
miRNA:   3'- aCGGCGuc--CGGUGGUCCauGUC-CA-GC- -5'
11047 3' -59.9 NC_002794.1 + 86823 0.67 0.710808
Target:  5'- gGCCGCGaccUCGCCGGGauCGGGUCGg -3'
miRNA:   3'- aCGGCGUcc-GGUGGUCCauGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 34486 0.67 0.710808
Target:  5'- aGCUGC--GCCGCCAGGUGaccaacCAGGgcgCGg -3'
miRNA:   3'- aCGGCGucCGGUGGUCCAU------GUCCa--GC- -5'
11047 3' -59.9 NC_002794.1 + 16216 0.68 0.701163
Target:  5'- gGUCG-AGGuCCGgCGGGU-CAGGUCGg -3'
miRNA:   3'- aCGGCgUCC-GGUgGUCCAuGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 56256 0.68 0.701163
Target:  5'- aGCaggGCAcGGCCACCGGGccgagcaGCAGG-CGg -3'
miRNA:   3'- aCGg--CGU-CCGGUGGUCCa------UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 118881 0.68 0.701163
Target:  5'- aGCUGCAGGUCgGCCcGGUGuucgcgUAGGUCc -3'
miRNA:   3'- aCGGCGUCCGG-UGGuCCAU------GUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 81811 0.68 0.698258
Target:  5'- aGCCGC--GCgCACCGcaucccgcaagaacGGUGCAGGUCu -3'
miRNA:   3'- aCGGCGucCG-GUGGU--------------CCAUGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 113884 0.68 0.698258
Target:  5'- gGCCGCGgcgcgcgucggcgcGGUCugCAGGaaggccucCAGGUCGg -3'
miRNA:   3'- aCGGCGU--------------CCGGugGUCCau------GUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 143690 0.68 0.691463
Target:  5'- cUGCCGCAGGgucgcguugcCCACCGcGGgccccgGCGGG-CGu -3'
miRNA:   3'- -ACGGCGUCC----------GGUGGU-CCa-----UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 34258 0.68 0.691463
Target:  5'- cGCCGCAGGCgGaCCGcGcGCAGG-CGg -3'
miRNA:   3'- aCGGCGUCCGgU-GGUcCaUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 47592 0.68 0.691463
Target:  5'- cUGCCGCccGaUCGCCAGGguCAGGUCu -3'
miRNA:   3'- -ACGGCGucC-GGUGGUCCauGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 188975 0.68 0.684646
Target:  5'- cGCCGCccagcucGGCCACCAGccagcggcagcucucCAGGUCGc -3'
miRNA:   3'- aCGGCGu------CCGGUGGUCcau------------GUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 153659 0.68 0.681717
Target:  5'- cGCCGCGuccGGCCGCCGGuuGUG-AGGcUCGa -3'
miRNA:   3'- aCGGCGU---CCGGUGGUC--CAUgUCC-AGC- -5'
11047 3' -59.9 NC_002794.1 + 55638 0.68 0.681717
Target:  5'- aGCaCGCGGGCCGgCAGGcGCAGcccCGa -3'
miRNA:   3'- aCG-GCGUCCGGUgGUCCaUGUCca-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.