miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 47592 0.68 0.691463
Target:  5'- cUGCCGCccGaUCGCCAGGguCAGGUCu -3'
miRNA:   3'- -ACGGCGucC-GGUGGUCCauGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 48873 0.67 0.720392
Target:  5'- -cCCGUcGGCgGCCAGGUgGCAGGcCa -3'
miRNA:   3'- acGGCGuCCGgUGGUCCA-UGUCCaGc -5'
11047 3' -59.9 NC_002794.1 + 49457 0.68 0.681717
Target:  5'- cGCCGUGGcGCCGCCGugaccGGccgccGCGGGUCu -3'
miRNA:   3'- aCGGCGUC-CGGUGGU-----CCa----UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 50520 0.73 0.409179
Target:  5'- aGCuCGCAGGUCAaCGGGUuguACAGGUUGc -3'
miRNA:   3'- aCG-GCGUCCGGUgGUCCA---UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 52864 0.68 0.681717
Target:  5'- gGCCGC-GGCCuuCC-GGUACacccgauggugGGGUCGa -3'
miRNA:   3'- aCGGCGuCCGGu-GGuCCAUG-----------UCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 52952 0.67 0.729905
Target:  5'- aGCCcaGCAGGUCcucgGCCAGGUGCucGGccUCGu -3'
miRNA:   3'- aCGG--CGUCCGG----UGGUCCAUGu-CC--AGC- -5'
11047 3' -59.9 NC_002794.1 + 54154 0.66 0.793841
Target:  5'- aGCCGCGuccCCACCAGcGcGCAGGUg- -3'
miRNA:   3'- aCGGCGUcc-GGUGGUC-CaUGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 54874 0.69 0.603027
Target:  5'- cGCCGCAGcGUCGCCuuAGGUugAugacccGGUUGg -3'
miRNA:   3'- aCGGCGUC-CGGUGG--UCCAugU------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 55638 0.68 0.681717
Target:  5'- aGCaCGCGGGCCGgCAGGcGCAGcccCGa -3'
miRNA:   3'- aCG-GCGUCCGGUgGUCCaUGUCca-GC- -5'
11047 3' -59.9 NC_002794.1 + 55989 0.71 0.525547
Target:  5'- aGCCGCGGGCgagCACCAGcaugACGuagcGGUCGg -3'
miRNA:   3'- aCGGCGUCCG---GUGGUCca--UGU----CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 56256 0.68 0.701163
Target:  5'- aGCaggGCAcGGCCACCGGGccgagcaGCAGG-CGg -3'
miRNA:   3'- aCGg--CGU-CCGGUGGUCCa------UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 61966 0.71 0.488187
Target:  5'- gGCCaGC-GGCCGCCuGcUGCAGGUCa -3'
miRNA:   3'- aCGG-CGuCCGGUGGuCcAUGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 70046 0.68 0.681717
Target:  5'- aGCaCGUAGGUCGCCcGGU-CGGG-CGg -3'
miRNA:   3'- aCG-GCGUCCGGUGGuCCAuGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 71067 0.77 0.230607
Target:  5'- cGCCGCAGcaGCCGCCGGGUccagacgaacaGCcGGUCGc -3'
miRNA:   3'- aCGGCGUC--CGGUGGUCCA-----------UGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 81811 0.68 0.698258
Target:  5'- aGCCGC--GCgCACCGcaucccgcaagaacGGUGCAGGUCu -3'
miRNA:   3'- aCGGCGucCG-GUGGU--------------CCAUGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 86823 0.67 0.710808
Target:  5'- gGCCGCGaccUCGCCGGGauCGGGUCGg -3'
miRNA:   3'- aCGGCGUcc-GGUGGUCCauGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 87082 0.66 0.77613
Target:  5'- cGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 87124 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 87166 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 87208 0.66 0.802497
Target:  5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.