miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 87271 0.67 0.720392
Target:  5'- gGgUGCAGGCCgGgCGGGUGgGGGUgGg -3'
miRNA:   3'- aCgGCGUCCGG-UgGUCCAUgUCCAgC- -5'
11047 3' -59.9 NC_002794.1 + 92315 0.66 0.802497
Target:  5'- gGgCGCGGGCgGCgGGGgcccggGCGGG-CGg -3'
miRNA:   3'- aCgGCGUCCGgUGgUCCa-----UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 93471 0.66 0.77613
Target:  5'- cGCCGCAcguGGCCACCuucucGCGGGagUCGc -3'
miRNA:   3'- aCGGCGU---CCGGUGGucca-UGUCC--AGC- -5'
11047 3' -59.9 NC_002794.1 + 94012 0.69 0.621732
Target:  5'- gGCgGCGGGCCGgCGGGUuccgccgGCGGGccCGa -3'
miRNA:   3'- aCGgCGUCCGGUgGUCCA-------UGUCCa-GC- -5'
11047 3' -59.9 NC_002794.1 + 95772 0.68 0.662121
Target:  5'- gGCCGCGacGGCgGCCGGGgcgAgAGGcgCGg -3'
miRNA:   3'- aCGGCGU--CCGgUGGUCCa--UgUCCa-GC- -5'
11047 3' -59.9 NC_002794.1 + 95837 0.66 0.802497
Target:  5'- aGCgGCGgcGGCgGCCGGGgaggcgGCGGG-CGg -3'
miRNA:   3'- aCGgCGU--CCGgUGGUCCa-----UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 96090 0.68 0.662121
Target:  5'- cGCCGaCGGGCgUACCuGGaaaGGGUCGa -3'
miRNA:   3'- aCGGC-GUCCG-GUGGuCCaugUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 101005 0.76 0.267438
Target:  5'- cUGCCGCGGGCCuuccugucgggggacGcgggCCGGGcGCGGGUCGg -3'
miRNA:   3'- -ACGGCGUCCGG---------------U----GGUCCaUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 101583 0.68 0.671934
Target:  5'- gGCCGCc-GCgGCCGGGgggGCGGGUg- -3'
miRNA:   3'- aCGGCGucCGgUGGUCCa--UGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 102081 0.84 0.083656
Target:  5'- cUGCCGCGGGCCGacgagccgccgcCCAcGGUGCGGGUCa -3'
miRNA:   3'- -ACGGCGUCCGGU------------GGU-CCAUGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 103454 0.66 0.773431
Target:  5'- aGCUGCGGcugguugauggacaGCCGCagCAGGUcCAGGUCc -3'
miRNA:   3'- aCGGCGUC--------------CGGUG--GUCCAuGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 104303 0.67 0.747758
Target:  5'- gGCCGgGugcacuugagguuGGCCGCgCA-GUACGGGUCGc -3'
miRNA:   3'- aCGGCgU-------------CCGGUG-GUcCAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 104446 0.69 0.639477
Target:  5'- cGCCGCGGGCgGCCcGagcccgggcggcguGUGCAGGaugCGg -3'
miRNA:   3'- aCGGCGUCCGgUGGuC--------------CAUGUCCa--GC- -5'
11047 3' -59.9 NC_002794.1 + 105961 0.67 0.757021
Target:  5'- gGCUGgGGGCCGCCGcGG-ACGaguuuccGGUCGc -3'
miRNA:   3'- aCGGCgUCCGGUGGU-CCaUGU-------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 107211 0.66 0.802497
Target:  5'- cGCC-CGGcGCCGCCGGGcggcgcgcgACGGGggCGg -3'
miRNA:   3'- aCGGcGUC-CGGUGGUCCa--------UGUCCa-GC- -5'
11047 3' -59.9 NC_002794.1 + 110625 0.69 0.632576
Target:  5'- aGCCGCGGcGCCGCgGcGGcg-GGGUCGg -3'
miRNA:   3'- aCGGCGUC-CGGUGgU-CCaugUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 111628 0.7 0.563936
Target:  5'- cGCCGC-GGCCGCCGccGGU-CGGG-CGc -3'
miRNA:   3'- aCGGCGuCCGGUGGU--CCAuGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 113376 0.7 0.563936
Target:  5'- gGgUGCGGGCCGCCGucGUGCAGG-CGc -3'
miRNA:   3'- aCgGCGUCCGGUGGUc-CAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 113615 0.67 0.757942
Target:  5'- cGCCGCG----GCCAGGUuCAGGUUGa -3'
miRNA:   3'- aCGGCGUccggUGGUCCAuGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 113884 0.68 0.698258
Target:  5'- gGCCGCGgcgcgcgucggcgcGGUCugCAGGaaggccucCAGGUCGg -3'
miRNA:   3'- aCGGCGU--------------CCGGugGUCCau------GUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.