Results 81 - 100 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 137987 | 0.66 | 0.81101 |
Target: 5'- cGCCGCAGcGCUggugcaGCUGGGcgcGCAGGUaCGc -3' miRNA: 3'- aCGGCGUC-CGG------UGGUCCa--UGUCCA-GC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 139685 | 0.67 | 0.720392 |
Target: 5'- aGCCGCcGGCCguGCCGG--ACAGGUa- -3' miRNA: 3'- aCGGCGuCCGG--UGGUCcaUGUCCAgc -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 139908 | 0.67 | 0.720392 |
Target: 5'- aGCCGCAGGCCGUCGGacggcacGCAGcuGUCGu -3' miRNA: 3'- aCGGCGUCCGGUGGUCca-----UGUC--CAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 140650 | 0.7 | 0.548476 |
Target: 5'- cGUCGUGGGCUGCgcgcagcuuuuggguCGGGcGCAGGUCGg -3' miRNA: 3'- aCGGCGUCCGGUG---------------GUCCaUGUCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 141654 | 0.76 | 0.258994 |
Target: 5'- gGCCGC-GGCCGCCggcGGGUcgagcgaagACGGGUCGc -3' miRNA: 3'- aCGGCGuCCGGUGG---UCCA---------UGUCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 142739 | 0.68 | 0.6513 |
Target: 5'- --aCGCAGGCCgagcuugACCAGGUGCuuGGUg- -3' miRNA: 3'- acgGCGUCCGG-------UGGUCCAUGu-CCAgc -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 142997 | 0.66 | 0.81101 |
Target: 5'- cGCCGU-GGCCAggaacccggUCAGcGUGC-GGUCGg -3' miRNA: 3'- aCGGCGuCCGGU---------GGUC-CAUGuCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 143035 | 0.76 | 0.271124 |
Target: 5'- gGUCGacgugcaGGGCCGCCAGGUugAGGcCGu -3' miRNA: 3'- aCGGCg------UCCGGUGGUCCAugUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 143279 | 0.66 | 0.767092 |
Target: 5'- cGgCGCcGGCCGCuCGGGgucggGCGGGUg- -3' miRNA: 3'- aCgGCGuCCGGUG-GUCCa----UGUCCAgc -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 143490 | 0.68 | 0.678786 |
Target: 5'- aUGUCGCuGGCCGCgGGGcUGCAGaugaggaagcgcacGUCGc -3' miRNA: 3'- -ACGGCGuCCGGUGgUCC-AUGUC--------------CAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 143690 | 0.68 | 0.691463 |
Target: 5'- cUGCCGCAGGgucgcguugcCCACCGcGGgccccgGCGGG-CGu -3' miRNA: 3'- -ACGGCGUCC----------GGUGGU-CCa-----UGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 148133 | 0.7 | 0.535059 |
Target: 5'- gGgCGCgGGGCCGCCGGGgcgaggGC-GGUCGc -3' miRNA: 3'- aCgGCG-UCCGGUGGUCCa-----UGuCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 149695 | 0.71 | 0.488187 |
Target: 5'- gGCCGCggGGGCCGCCug--GCGGGUgGg -3' miRNA: 3'- aCGGCG--UCCGGUGGuccaUGUCCAgC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 151210 | 0.71 | 0.50672 |
Target: 5'- cGCCGCcGGCUACCGGGUcuugggcCAGGg-- -3' miRNA: 3'- aCGGCGuCCGGUGGUCCAu------GUCCagc -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 151644 | 0.69 | 0.620746 |
Target: 5'- cGCCGCcGGCCggcacuuggcucgccGCCGGGUGacgaccgaggguacuUGGGUCGc -3' miRNA: 3'- aCGGCGuCCGG---------------UGGUCCAU---------------GUCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 152164 | 0.71 | 0.515158 |
Target: 5'- cGCCuGCGGGCCGCCGaccuGUGCAgcuaccugaacacGGUCGc -3' miRNA: 3'- aCGG-CGUCCGGUGGUc---CAUGU-------------CCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 152580 | 0.67 | 0.720392 |
Target: 5'- cGCCGCGgcGGCCGCCAcgucccugcGGcGCGGGcCc -3' miRNA: 3'- aCGGCGU--CCGGUGGU---------CCaUGUCCaGc -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 153659 | 0.68 | 0.681717 |
Target: 5'- cGCCGCGuccGGCCGCCGGuuGUG-AGGcUCGa -3' miRNA: 3'- aCGGCGU---CCGGUGGUC--CAUgUCC-AGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 154408 | 0.69 | 0.591247 |
Target: 5'- gUGCCGguGGCCAgCGcucgcauccgACAGGUCGc -3' miRNA: 3'- -ACGGCguCCGGUgGUcca-------UGUCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 156415 | 0.69 | 0.642434 |
Target: 5'- gGCCGCGgccacGGCCGgCGGGUgagagACcGGUCGc -3' miRNA: 3'- aCGGCGU-----CCGGUgGUCCA-----UGuCCAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home