miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 195029 0.8 0.158505
Target:  5'- aGUCGCGcGCCGCCAGGUgcaucgucgucgucgACAGGUCGa -3'
miRNA:   3'- aCGGCGUcCGGUGGUCCA---------------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 193201 0.74 0.371993
Target:  5'- gGUCGUGcGCCACCAGGUACAgcacgcuucgcucguGGUCGu -3'
miRNA:   3'- aCGGCGUcCGGUGGUCCAUGU---------------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 193068 0.66 0.767092
Target:  5'- gGCUGCGGGCCGuCgCGGGacagccgcaGCAGcGUCGu -3'
miRNA:   3'- aCGGCGUCCGGU-G-GUCCa--------UGUC-CAGC- -5'
11047 3' -59.9 NC_002794.1 + 190883 0.71 0.50672
Target:  5'- gGCUGCcGuGCC-CCAGGUACAGGa-- -3'
miRNA:   3'- aCGGCGuC-CGGuGGUCCAUGUCCagc -5'
11047 3' -59.9 NC_002794.1 + 190823 0.67 0.761615
Target:  5'- cGUCGaaguugaAGGCCACCAGaUacagcacgaucuccaGCGGGUCGu -3'
miRNA:   3'- aCGGCg------UCCGGUGGUCcA---------------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 190595 0.7 0.583416
Target:  5'- cGCCGCAGcuCCuCCAGGUccgcgacagccGCAGGuUCGa -3'
miRNA:   3'- aCGGCGUCc-GGuGGUCCA-----------UGUCC-AGC- -5'
11047 3' -59.9 NC_002794.1 + 190210 0.66 0.767092
Target:  5'- cGCCGCGcgcacCCGCCGGGcGCuccGGUCGu -3'
miRNA:   3'- aCGGCGUcc---GGUGGUCCaUGu--CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 189407 0.67 0.729905
Target:  5'- aGuCCGCcaGGGCCAgCGGGUucugcugccGCAGGUa- -3'
miRNA:   3'- aC-GGCG--UCCGGUgGUCCA---------UGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 189072 0.66 0.785049
Target:  5'- cGUCuCGGGCCGCC-GGUACAGacacUCGc -3'
miRNA:   3'- aCGGcGUCCGGUGGuCCAUGUCc---AGC- -5'
11047 3' -59.9 NC_002794.1 + 188975 0.68 0.684646
Target:  5'- cGCCGCccagcucGGCCACCAGccagcggcagcucucCAGGUCGc -3'
miRNA:   3'- aCGGCGu------CCGGUGGUCcau------------GUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 188144 0.68 0.652285
Target:  5'- aGCUcuuccucCAGGUCgGCCGGGUcggACAGGUCGg -3'
miRNA:   3'- aCGGc------GUCCGG-UGGUCCA---UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 187076 0.71 0.525547
Target:  5'- gUGCCGCAGGCUgcucGCCAcguGGaACAGcccGUCGg -3'
miRNA:   3'- -ACGGCGUCCGG----UGGU---CCaUGUC---CAGC- -5'
11047 3' -59.9 NC_002794.1 + 186203 0.69 0.63652
Target:  5'- -aCCGCGGGCC-CCAGGgcagauggcggucCGGGUCc -3'
miRNA:   3'- acGGCGUCCGGuGGUCCau-----------GUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 185270 0.76 0.258994
Target:  5'- cGCCGCcggccgaguGGGCCGCCGG--ACAGGUCa -3'
miRNA:   3'- aCGGCG---------UCCGGUGGUCcaUGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 182735 0.72 0.469979
Target:  5'- cUGCCGC-GGCC-CCAgaaagacgcGGUACAGGUa- -3'
miRNA:   3'- -ACGGCGuCCGGuGGU---------CCAUGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 182553 0.67 0.728957
Target:  5'- cGCCGCGGccggcaccGUCACCGGGaucuccgUGCGGG-CGa -3'
miRNA:   3'- aCGGCGUC--------CGGUGGUCC-------AUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 182147 0.71 0.479041
Target:  5'- cGUCGCacGGGCaGCuCAGGUuCAGGUCGg -3'
miRNA:   3'- aCGGCG--UCCGgUG-GUCCAuGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 182034 0.7 0.563936
Target:  5'- gGCCGCcGGCgACCAGac-CAGGUCc -3'
miRNA:   3'- aCGGCGuCCGgUGGUCcauGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 181587 0.68 0.662121
Target:  5'- gGCUGCGGGCCGCgAc---CGGGUCGc -3'
miRNA:   3'- aCGGCGUCCGGUGgUccauGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 181540 0.68 0.680741
Target:  5'- cGCCgGCGGGCCggcgcucucggucGCCGGGccaauCAGGaUCGa -3'
miRNA:   3'- aCGG-CGUCCGG-------------UGGUCCau---GUCC-AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.