miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 156415 0.69 0.642434
Target:  5'- gGCCGCGgccacGGCCGgCGGGUgagagACcGGUCGc -3'
miRNA:   3'- aCGGCGU-----CCGGUgGUCCA-----UGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 154408 0.69 0.591247
Target:  5'- gUGCCGguGGCCAgCGcucgcauccgACAGGUCGc -3'
miRNA:   3'- -ACGGCguCCGGUgGUcca-------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 153659 0.68 0.681717
Target:  5'- cGCCGCGuccGGCCGCCGGuuGUG-AGGcUCGa -3'
miRNA:   3'- aCGGCGU---CCGGUGGUC--CAUgUCC-AGC- -5'
11047 3' -59.9 NC_002794.1 + 152580 0.67 0.720392
Target:  5'- cGCCGCGgcGGCCGCCAcgucccugcGGcGCGGGcCc -3'
miRNA:   3'- aCGGCGU--CCGGUGGU---------CCaUGUCCaGc -5'
11047 3' -59.9 NC_002794.1 + 152164 0.71 0.515158
Target:  5'- cGCCuGCGGGCCGCCGaccuGUGCAgcuaccugaacacGGUCGc -3'
miRNA:   3'- aCGG-CGUCCGGUGGUc---CAUGU-------------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 151644 0.69 0.620746
Target:  5'- cGCCGCcGGCCggcacuuggcucgccGCCGGGUGacgaccgaggguacuUGGGUCGc -3'
miRNA:   3'- aCGGCGuCCGG---------------UGGUCCAU---------------GUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 151210 0.71 0.50672
Target:  5'- cGCCGCcGGCUACCGGGUcuugggcCAGGg-- -3'
miRNA:   3'- aCGGCGuCCGGUGGUCCAu------GUCCagc -5'
11047 3' -59.9 NC_002794.1 + 149695 0.71 0.488187
Target:  5'- gGCCGCggGGGCCGCCug--GCGGGUgGg -3'
miRNA:   3'- aCGGCG--UCCGGUGGuccaUGUCCAgC- -5'
11047 3' -59.9 NC_002794.1 + 148133 0.7 0.535059
Target:  5'- gGgCGCgGGGCCGCCGGGgcgaggGC-GGUCGc -3'
miRNA:   3'- aCgGCG-UCCGGUGGUCCa-----UGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 143690 0.68 0.691463
Target:  5'- cUGCCGCAGGgucgcguugcCCACCGcGGgccccgGCGGG-CGu -3'
miRNA:   3'- -ACGGCGUCC----------GGUGGU-CCa-----UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 143490 0.68 0.678786
Target:  5'- aUGUCGCuGGCCGCgGGGcUGCAGaugaggaagcgcacGUCGc -3'
miRNA:   3'- -ACGGCGuCCGGUGgUCC-AUGUC--------------CAGC- -5'
11047 3' -59.9 NC_002794.1 + 143279 0.66 0.767092
Target:  5'- cGgCGCcGGCCGCuCGGGgucggGCGGGUg- -3'
miRNA:   3'- aCgGCGuCCGGUG-GUCCa----UGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 143035 0.76 0.271124
Target:  5'- gGUCGacgugcaGGGCCGCCAGGUugAGGcCGu -3'
miRNA:   3'- aCGGCg------UCCGGUGGUCCAugUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 142997 0.66 0.81101
Target:  5'- cGCCGU-GGCCAggaacccggUCAGcGUGC-GGUCGg -3'
miRNA:   3'- aCGGCGuCCGGU---------GGUC-CAUGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 142739 0.68 0.6513
Target:  5'- --aCGCAGGCCgagcuugACCAGGUGCuuGGUg- -3'
miRNA:   3'- acgGCGUCCGG-------UGGUCCAUGu-CCAgc -5'
11047 3' -59.9 NC_002794.1 + 141654 0.76 0.258994
Target:  5'- gGCCGC-GGCCGCCggcGGGUcgagcgaagACGGGUCGc -3'
miRNA:   3'- aCGGCGuCCGGUGG---UCCA---------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 140650 0.7 0.548476
Target:  5'- cGUCGUGGGCUGCgcgcagcuuuuggguCGGGcGCAGGUCGg -3'
miRNA:   3'- aCGGCGUCCGGUG---------------GUCCaUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 139908 0.67 0.720392
Target:  5'- aGCCGCAGGCCGUCGGacggcacGCAGcuGUCGu -3'
miRNA:   3'- aCGGCGUCCGGUGGUCca-----UGUC--CAGC- -5'
11047 3' -59.9 NC_002794.1 + 139685 0.67 0.720392
Target:  5'- aGCCGCcGGCCguGCCGG--ACAGGUa- -3'
miRNA:   3'- aCGGCGuCCGG--UGGUCcaUGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 137987 0.66 0.81101
Target:  5'- cGCCGCAGcGCUggugcaGCUGGGcgcGCAGGUaCGc -3'
miRNA:   3'- aCGGCGUC-CGG------UGGUCCa--UGUCCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.