miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 137568 0.67 0.710808
Target:  5'- cGCCGCcgucGCCGCCGGGgcCGGaGUgCGg -3'
miRNA:   3'- aCGGCGuc--CGGUGGUCCauGUC-CA-GC- -5'
11047 3' -59.9 NC_002794.1 + 136453 0.67 0.733689
Target:  5'- cGCUGUugggucaggucggcgAGGuUCGCCGcGUACAGGUCGa -3'
miRNA:   3'- aCGGCG---------------UCC-GGUGGUcCAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 135534 0.67 0.717524
Target:  5'- cGCCGCucGGUCGCCgaccgaccgaauagGGGcGCAGGcCGg -3'
miRNA:   3'- aCGGCGu-CCGGUGG--------------UCCaUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 134173 0.67 0.720392
Target:  5'- gGCCGCGcggauGGCCACCucguaucggcuGGUGgGGGcCGu -3'
miRNA:   3'- aCGGCGU-----CCGGUGGu----------CCAUgUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 133524 0.7 0.544632
Target:  5'- gGCCGUugaguuGGCCgACCGGGUACGcGUUGu -3'
miRNA:   3'- aCGGCGu-----CCGG-UGGUCCAUGUcCAGC- -5'
11047 3' -59.9 NC_002794.1 + 132100 0.69 0.632576
Target:  5'- cGCCGUucgAGuGCCAUgGGGUGgAcGGUCGg -3'
miRNA:   3'- aCGGCG---UC-CGGUGgUCCAUgU-CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 129997 0.68 0.652285
Target:  5'- cGUCGaacGGCC-CCGGagcGUGCGGGUCGg -3'
miRNA:   3'- aCGGCgu-CCGGuGGUC---CAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 125357 0.71 0.497415
Target:  5'- aGCCGCuGGCCGUCAGcaACAGcGUCGa -3'
miRNA:   3'- aCGGCGuCCGGUGGUCcaUGUC-CAGC- -5'
11047 3' -59.9 NC_002794.1 + 122979 0.67 0.720392
Target:  5'- gGCUGUAcGCgCGCCuGGUGCGGGcCGu -3'
miRNA:   3'- aCGGCGUcCG-GUGGuCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 120111 0.71 0.529344
Target:  5'- cGCCGCGcgugacgcgcgcgacGGCgACCGGGgACGGGcCGg -3'
miRNA:   3'- aCGGCGU---------------CCGgUGGUCCaUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 119132 0.7 0.583416
Target:  5'- gGCCugGCAGGCguUCGGGUggucgcgcaGCAGGUCc -3'
miRNA:   3'- aCGG--CGUCCGguGGUCCA---------UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 118881 0.68 0.701163
Target:  5'- aGCUGCAGGUCgGCCcGGUGuucgcgUAGGUCc -3'
miRNA:   3'- aCGGCGUCCGG-UGGuCCAU------GUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 117369 0.7 0.535059
Target:  5'- aGCgGCGGGCCGCC---UGCAcGGUCGc -3'
miRNA:   3'- aCGgCGUCCGGUGGuccAUGU-CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 117024 0.66 0.810165
Target:  5'- aGCCGCgccaccccGGGUccgacagCACgAGGUACGGGcCGu -3'
miRNA:   3'- aCGGCG--------UCCG-------GUGgUCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 116406 0.67 0.729905
Target:  5'- gUGUgGCGGGgcgcgagCACCAGGgcGCGGGUCa -3'
miRNA:   3'- -ACGgCGUCCg------GUGGUCCa-UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 116360 0.72 0.461006
Target:  5'- gGCCGCGcGGuCCgACCGGucgguggcGUGCGGGUCGa -3'
miRNA:   3'- aCGGCGU-CC-GG-UGGUC--------CAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 116090 0.67 0.720392
Target:  5'- cGCgGCGGucGUCGCCGGGgucgAGGUCGa -3'
miRNA:   3'- aCGgCGUC--CGGUGGUCCaug-UCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 115948 0.66 0.788581
Target:  5'- cGCCGCGuGUCGCCGGGgaccgugggggggaGCGGGaCGg -3'
miRNA:   3'- aCGGCGUcCGGUGGUCCa-------------UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 115595 0.67 0.748688
Target:  5'- gGCUGCGGucgacccgcucGCCcggcGCCGGGagGCGGGUCa -3'
miRNA:   3'- aCGGCGUC-----------CGG----UGGUCCa-UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 114341 0.73 0.376712
Target:  5'- cGCCGCAGcggcucguccGCCGCCAGGgccggcUGCAGGgccgCGu -3'
miRNA:   3'- aCGGCGUC----------CGGUGGUCC------AUGUCCa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.