Results 1 - 20 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 195029 | 0.8 | 0.158505 |
Target: 5'- aGUCGCGcGCCGCCAGGUgcaucgucgucgucgACAGGUCGa -3' miRNA: 3'- aCGGCGUcCGGUGGUCCA---------------UGUCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 54154 | 0.66 | 0.793841 |
Target: 5'- aGCCGCGuccCCACCAGcGcGCAGGUg- -3' miRNA: 3'- aCGGCGUcc-GGUGGUC-CaUGUCCAgc -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 43615 | 0.66 | 0.793841 |
Target: 5'- gGCaGCAggacguGGCCGCCAGGaGCuGGUgGa -3' miRNA: 3'- aCGgCGU------CCGGUGGUCCaUGuCCAgC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 14765 | 0.66 | 0.793841 |
Target: 5'- aGCCGUcgAGGCCGCUgAGGccgGCgAGGcCGg -3' miRNA: 3'- aCGGCG--UCCGGUGG-UCCa--UG-UCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 115948 | 0.66 | 0.788581 |
Target: 5'- cGCCGCGuGUCGCCGGGgaccgugggggggaGCGGGaCGg -3' miRNA: 3'- aCGGCGUcCGGUGGUCCa-------------UGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 189072 | 0.66 | 0.785049 |
Target: 5'- cGUCuCGGGCCGCC-GGUACAGacacUCGc -3' miRNA: 3'- aCGGcGUCCGGUGGuCCAUGUCc---AGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 93471 | 0.66 | 0.77613 |
Target: 5'- cGCCGCAcguGGCCACCuucucGCGGGagUCGc -3' miRNA: 3'- aCGGCGU---CCGGUGGucca-UGUCC--AGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 87082 | 0.66 | 0.77613 |
Target: 5'- cGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3' miRNA: 3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 193068 | 0.66 | 0.767092 |
Target: 5'- gGCUGCGGGCCGuCgCGGGacagccgcaGCAGcGUCGu -3' miRNA: 3'- aCGGCGUCCGGU-G-GUCCa--------UGUC-CAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 19837 | 0.66 | 0.802497 |
Target: 5'- cUGCUGCAcGGCUACgGGGacUGCGuGUCGc -3' miRNA: 3'- -ACGGCGU-CCGGUGgUCC--AUGUcCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 87166 | 0.66 | 0.802497 |
Target: 5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3' miRNA: 3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 87124 | 0.66 | 0.802497 |
Target: 5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3' miRNA: 3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 13163 | 0.66 | 0.81101 |
Target: 5'- aUGCCGCAcacccaCCACCAGGacgACucGUCGg -3' miRNA: 3'- -ACGGCGUcc----GGUGGUCCa--UGucCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 142997 | 0.66 | 0.81101 |
Target: 5'- cGCCGU-GGCCAggaacccggUCAGcGUGC-GGUCGg -3' miRNA: 3'- aCGGCGuCCGGU---------GGUC-CAUGuCCAGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 117024 | 0.66 | 0.810165 |
Target: 5'- aGCCGCgccaccccGGGUccgacagCACgAGGUACGGGcCGu -3' miRNA: 3'- aCGGCG--------UCCG-------GUGgUCCAUGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 44645 | 0.66 | 0.802497 |
Target: 5'- cGCCGCAGGaUguUCGGucgACAGGUCc -3' miRNA: 3'- aCGGCGUCC-GguGGUCca-UGUCCAGc -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 107211 | 0.66 | 0.802497 |
Target: 5'- cGCC-CGGcGCCGCCGGGcggcgcgcgACGGGggCGg -3' miRNA: 3'- aCGGcGUC-CGGUGGUCCa--------UGUCCa-GC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 95837 | 0.66 | 0.802497 |
Target: 5'- aGCgGCGgcGGCgGCCGGGgaggcgGCGGG-CGg -3' miRNA: 3'- aCGgCGU--CCGgUGGUCCa-----UGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 92315 | 0.66 | 0.802497 |
Target: 5'- gGgCGCGGGCgGCgGGGgcccggGCGGG-CGg -3' miRNA: 3'- aCgGCGUCCGgUGgUCCa-----UGUCCaGC- -5' |
|||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 87208 | 0.66 | 0.802497 |
Target: 5'- gGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3' miRNA: 3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home