miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 3' -59.9 NC_002794.1 + 107211 0.66 0.802497
Target:  5'- cGCC-CGGcGCCGCCGGGcggcgcgcgACGGGggCGg -3'
miRNA:   3'- aCGGcGUC-CGGUGGUCCa--------UGUCCa-GC- -5'
11047 3' -59.9 NC_002794.1 + 44645 0.66 0.802497
Target:  5'- cGCCGCAGGaUguUCGGucgACAGGUCc -3'
miRNA:   3'- aCGGCGUCC-GguGGUCca-UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 117024 0.66 0.810165
Target:  5'- aGCCGCgccaccccGGGUccgacagCACgAGGUACGGGcCGu -3'
miRNA:   3'- aCGGCG--------UCCG-------GUGgUCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 142997 0.66 0.81101
Target:  5'- cGCCGU-GGCCAggaacccggUCAGcGUGC-GGUCGg -3'
miRNA:   3'- aCGGCGuCCGGU---------GGUC-CAUGuCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 13163 0.66 0.81101
Target:  5'- aUGCCGCAcacccaCCACCAGGacgACucGUCGg -3'
miRNA:   3'- -ACGGCGUcc----GGUGGUCCa--UGucCAGC- -5'
11047 3' -59.9 NC_002794.1 + 14765 0.66 0.793841
Target:  5'- aGCCGUcgAGGCCGCUgAGGccgGCgAGGcCGg -3'
miRNA:   3'- aCGGCG--UCCGGUGG-UCCa--UG-UCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 115948 0.66 0.788581
Target:  5'- cGCCGCGuGUCGCCGGGgaccgugggggggaGCGGGaCGg -3'
miRNA:   3'- aCGGCGUcCGGUGGUCCa-------------UGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 37330 0.67 0.748688
Target:  5'- aGCgGUGGGgC-CCGGGcggcaGCAGGUCGg -3'
miRNA:   3'- aCGgCGUCCgGuGGUCCa----UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 104303 0.67 0.747758
Target:  5'- gGCCGgGugcacuugagguuGGCCGCgCA-GUACGGGUCGc -3'
miRNA:   3'- aCGGCgU-------------CCGGUG-GUcCAUGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 115595 0.67 0.748688
Target:  5'- gGCUGCGGucgacccgcucGCCcggcGCCGGGagGCGGGUCa -3'
miRNA:   3'- aCGGCGUC-----------CGG----UGGUCCa-UGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 113615 0.67 0.757942
Target:  5'- cGCCGCG----GCCAGGUuCAGGUUGa -3'
miRNA:   3'- aCGGCGUccggUGGUCCAuGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 105961 0.67 0.757021
Target:  5'- gGCUGgGGGCCGCCGcGG-ACGaguuuccGGUCGc -3'
miRNA:   3'- aCGGCgUCCGGUGGU-CCaUGU-------CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 190823 0.67 0.761615
Target:  5'- cGUCGaaguugaAGGCCACCAGaUacagcacgaucuccaGCGGGUCGu -3'
miRNA:   3'- aCGGCg------UCCGGUGGUCcA---------------UGUCCAGC- -5'
11047 3' -59.9 NC_002794.1 + 143279 0.66 0.767092
Target:  5'- cGgCGCcGGCCGCuCGGGgucggGCGGGUg- -3'
miRNA:   3'- aCgGCGuCCGGUG-GUCCa----UGUCCAgc -5'
11047 3' -59.9 NC_002794.1 + 103454 0.66 0.773431
Target:  5'- aGCUGCGGcugguugauggacaGCCGCagCAGGUcCAGGUCc -3'
miRNA:   3'- aCGGCGUC--------------CGGUG--GUCCAuGUCCAGc -5'
11047 3' -59.9 NC_002794.1 + 190210 0.66 0.767092
Target:  5'- cGCCGCGcgcacCCGCCGGGcGCuccGGUCGu -3'
miRNA:   3'- aCGGCGUcc---GGUGGUCCaUGu--CCAGC- -5'
11047 3' -59.9 NC_002794.1 + 193068 0.66 0.767092
Target:  5'- gGCUGCGGGCCGuCgCGGGacagccgcaGCAGcGUCGu -3'
miRNA:   3'- aCGGCGUCCGGU-G-GUCCa--------UGUC-CAGC- -5'
11047 3' -59.9 NC_002794.1 + 87082 0.66 0.77613
Target:  5'- cGgUGCAGGCCggGCggguggGGGUGCAGGcCGg -3'
miRNA:   3'- aCgGCGUCCGG--UGg-----UCCAUGUCCaGC- -5'
11047 3' -59.9 NC_002794.1 + 93471 0.66 0.77613
Target:  5'- cGCCGCAcguGGCCACCuucucGCGGGagUCGc -3'
miRNA:   3'- aCGGCGU---CCGGUGGucca-UGUCC--AGC- -5'
11047 3' -59.9 NC_002794.1 + 189072 0.66 0.785049
Target:  5'- cGUCuCGGGCCGCC-GGUACAGacacUCGc -3'
miRNA:   3'- aCGGcGUCCGGUGGuCCAUGUCc---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.