Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11047 | 3' | -59.9 | NC_002794.1 | + | 116090 | 0.67 | 0.720392 |
Target: 5'- cGCgGCGGucGUCGCCGGGgucgAGGUCGa -3' miRNA: 3'- aCGgCGUC--CGGUGGUCCaug-UCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 86823 | 0.67 | 0.710808 |
Target: 5'- gGCCGCGaccUCGCCGGGauCGGGUCGg -3' miRNA: 3'- aCGGCGUcc-GGUGGUCCauGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 137568 | 0.67 | 0.710808 |
Target: 5'- cGCCGCcgucGCCGCCGGGgcCGGaGUgCGg -3' miRNA: 3'- aCGGCGuc--CGGUGGUCCauGUC-CA-GC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 135534 | 0.67 | 0.717524 |
Target: 5'- cGCCGCucGGUCGCCgaccgaccgaauagGGGcGCAGGcCGg -3' miRNA: 3'- aCGGCGu-CCGGUGG--------------UCCaUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 32595 | 0.67 | 0.710808 |
Target: 5'- gGCCG-GGGCCgggGCCGGGgcCGGGgaUCGg -3' miRNA: 3'- aCGGCgUCCGG---UGGUCCauGUCC--AGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 118881 | 0.68 | 0.701163 |
Target: 5'- aGCUGCAGGUCgGCCcGGUGuucgcgUAGGUCc -3' miRNA: 3'- aCGGCGUCCGG-UGGuCCAU------GUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 56256 | 0.68 | 0.701163 |
Target: 5'- aGCaggGCAcGGCCACCGGGccgagcaGCAGG-CGg -3' miRNA: 3'- aCGg--CGU-CCGGUGGUCCa------UGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 139908 | 0.67 | 0.720392 |
Target: 5'- aGCCGCAGGCCGUCGGacggcacGCAGcuGUCGu -3' miRNA: 3'- aCGGCGUCCGGUGGUCca-----UGUC--CAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 134173 | 0.67 | 0.720392 |
Target: 5'- gGCCGCGcggauGGCCACCucguaucggcuGGUGgGGGcCGu -3' miRNA: 3'- aCGGCGU-----CCGGUGGu----------CCAUgUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 48873 | 0.67 | 0.720392 |
Target: 5'- -cCCGUcGGCgGCCAGGUgGCAGGcCa -3' miRNA: 3'- acGGCGuCCGgUGGUCCA-UGUCCaGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 115595 | 0.67 | 0.748688 |
Target: 5'- gGCUGCGGucgacccgcucGCCcggcGCCGGGagGCGGGUCa -3' miRNA: 3'- aCGGCGUC-----------CGG----UGGUCCa-UGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 104303 | 0.67 | 0.747758 |
Target: 5'- gGCCGgGugcacuugagguuGGCCGCgCA-GUACGGGUCGc -3' miRNA: 3'- aCGGCgU-------------CCGGUG-GUcCAUGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 37330 | 0.67 | 0.748688 |
Target: 5'- aGCgGUGGGgC-CCGGGcggcaGCAGGUCGg -3' miRNA: 3'- aCGgCGUCCgGuGGUCCa----UGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 34704 | 0.67 | 0.73934 |
Target: 5'- cGCCaGCAGGcCCGCCggcgccacgAGGcGCGGG-CGg -3' miRNA: 3'- aCGG-CGUCC-GGUGG---------UCCaUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 189407 | 0.67 | 0.729905 |
Target: 5'- aGuCCGCcaGGGCCAgCGGGUucugcugccGCAGGUa- -3' miRNA: 3'- aC-GGCG--UCCGGUgGUCCA---------UGUCCAgc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 136453 | 0.67 | 0.733689 |
Target: 5'- cGCUGUugggucaggucggcgAGGuUCGCCGcGUACAGGUCGa -3' miRNA: 3'- aCGGCG---------------UCC-GGUGGUcCAUGUCCAGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 52952 | 0.67 | 0.729905 |
Target: 5'- aGCCcaGCAGGUCcucgGCCAGGUGCucGGccUCGu -3' miRNA: 3'- aCGG--CGUCCGG----UGGUCCAUGu-CC--AGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 116406 | 0.67 | 0.729905 |
Target: 5'- gUGUgGCGGGgcgcgagCACCAGGgcGCGGGUCa -3' miRNA: 3'- -ACGgCGUCCg------GUGGUCCa-UGUCCAGc -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 182553 | 0.67 | 0.728957 |
Target: 5'- cGCCGCGGccggcaccGUCACCGGGaucuccgUGCGGG-CGa -3' miRNA: 3'- aCGGCGUC--------CGGUGGUCC-------AUGUCCaGC- -5' |
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11047 | 3' | -59.9 | NC_002794.1 | + | 152580 | 0.67 | 0.720392 |
Target: 5'- cGCCGCGgcGGCCGCCAcgucccugcGGcGCGGGcCc -3' miRNA: 3'- aCGGCGU--CCGGUGGU---------CCaUGUCCaGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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