miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11047 5' -56.8 NC_002794.1 + 20600 0.66 0.936826
Target:  5'- uGCGcUCCGUGCCCGgcuucgAGAUGcccGGCu -3'
miRNA:   3'- gCGCaGGGCAUGGGCa-----UCUACc--UCGu -5'
11047 5' -56.8 NC_002794.1 + 44290 0.66 0.931994
Target:  5'- cCGCG-CCCGccgGgCCGgcGAggcggGGAGCGa -3'
miRNA:   3'- -GCGCaGGGCa--UgGGCauCUa----CCUCGU- -5'
11047 5' -56.8 NC_002794.1 + 123599 0.66 0.931994
Target:  5'- aGCGUCCCGgaacGCCUGUG---GGAcGCGc -3'
miRNA:   3'- gCGCAGGGCa---UGGGCAUcuaCCU-CGU- -5'
11047 5' -56.8 NC_002794.1 + 122035 0.66 0.931499
Target:  5'- gGCGUCUCGUGCagcaucaCCGcgAGAUGGAu-- -3'
miRNA:   3'- gCGCAGGGCAUG-------GGCa-UCUACCUcgu -5'
11047 5' -56.8 NC_002794.1 + 143897 0.66 0.926937
Target:  5'- aGCGUCCUGUugACCUGc-GAcGGGGCc -3'
miRNA:   3'- gCGCAGGGCA--UGGGCauCUaCCUCGu -5'
11047 5' -56.8 NC_002794.1 + 90354 0.66 0.921654
Target:  5'- uGCGUCCUGUGCaCCGUGcgcGUGcaGGGCc -3'
miRNA:   3'- gCGCAGGGCAUG-GGCAUc--UAC--CUCGu -5'
11047 5' -56.8 NC_002794.1 + 53702 0.66 0.921654
Target:  5'- cCGCGUCCUGccacucGCCCucgGGGUGGAcccGCGc -3'
miRNA:   3'- -GCGCAGGGCa-----UGGGca-UCUACCU---CGU- -5'
11047 5' -56.8 NC_002794.1 + 104448 0.66 0.919478
Target:  5'- cCGCGggcggCCCGaGCCCGggcggcgugugcaGGAUGcGGGCGg -3'
miRNA:   3'- -GCGCa----GGGCaUGGGCa------------UCUAC-CUCGU- -5'
11047 5' -56.8 NC_002794.1 + 175562 0.67 0.898277
Target:  5'- gGCGaCCCGUuggaaacccGCCgGUGGugucaGUGGAGCu -3'
miRNA:   3'- gCGCaGGGCA---------UGGgCAUC-----UACCUCGu -5'
11047 5' -56.8 NC_002794.1 + 90979 0.67 0.891881
Target:  5'- gGCGUggcCUCGUACCgGgccgAGgcGGAGCGg -3'
miRNA:   3'- gCGCA---GGGCAUGGgCa---UCuaCCUCGU- -5'
11047 5' -56.8 NC_002794.1 + 66255 0.67 0.878445
Target:  5'- gGCGaCCCGUccggcCCCGUAGAc-GAGCGg -3'
miRNA:   3'- gCGCaGGGCAu----GGGCAUCUacCUCGU- -5'
11047 5' -56.8 NC_002794.1 + 488 0.68 0.841316
Target:  5'- gGCGUuuagCCCGUcGCCU--GGGUGGGGCGu -3'
miRNA:   3'- gCGCA----GGGCA-UGGGcaUCUACCUCGU- -5'
11047 5' -56.8 NC_002794.1 + 195419 0.68 0.841316
Target:  5'- aCGCGUCCCG-AUCCGcacacGGAGCc -3'
miRNA:   3'- -GCGCAGGGCaUGGGCaucuaCCUCGu -5'
11047 5' -56.8 NC_002794.1 + 124472 0.68 0.841316
Target:  5'- gGCGUCgCCGccgcacGCCCGgaccgccGGAUGGAGUc -3'
miRNA:   3'- gCGCAG-GGCa-----UGGGCa------UCUACCUCGu -5'
11047 5' -56.8 NC_002794.1 + 129620 0.68 0.833327
Target:  5'- aCGUGUCaUCGUACCCacGGAgcGGAGCGg -3'
miRNA:   3'- -GCGCAG-GGCAUGGGcaUCUa-CCUCGU- -5'
11047 5' -56.8 NC_002794.1 + 38622 0.68 0.833327
Target:  5'- gCGCGUCCCG-ACUCGccGGUGcGGCGc -3'
miRNA:   3'- -GCGCAGGGCaUGGGCauCUACcUCGU- -5'
11047 5' -56.8 NC_002794.1 + 117471 0.68 0.833327
Target:  5'- gGuCGUCggCGUACUCGUGGAUGGcguGCAg -3'
miRNA:   3'- gC-GCAGg-GCAUGGGCAUCUACCu--CGU- -5'
11047 5' -56.8 NC_002794.1 + 26634 0.69 0.822684
Target:  5'- cCGCGUCCgcgcacccggacggCGgccgGCUCGUcggcgGGGUGGAGCGc -3'
miRNA:   3'- -GCGCAGG--------------GCa---UGGGCA-----UCUACCUCGU- -5'
11047 5' -56.8 NC_002794.1 + 136868 0.7 0.772974
Target:  5'- gGUGUUCUGgGCCCGgaucUGGAcgUGGAGCAg -3'
miRNA:   3'- gCGCAGGGCaUGGGC----AUCU--ACCUCGU- -5'
11047 5' -56.8 NC_002794.1 + 65758 0.7 0.754541
Target:  5'- cCGCGcCgCCGccGCCCGUGG-UGGGGCc -3'
miRNA:   3'- -GCGCaG-GGCa-UGGGCAUCuACCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.