Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11047 | 5' | -56.8 | NC_002794.1 | + | 20600 | 0.66 | 0.936826 |
Target: 5'- uGCGcUCCGUGCCCGgcuucgAGAUGcccGGCu -3' miRNA: 3'- gCGCaGGGCAUGGGCa-----UCUACc--UCGu -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 44290 | 0.66 | 0.931994 |
Target: 5'- cCGCG-CCCGccgGgCCGgcGAggcggGGAGCGa -3' miRNA: 3'- -GCGCaGGGCa--UgGGCauCUa----CCUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 123599 | 0.66 | 0.931994 |
Target: 5'- aGCGUCCCGgaacGCCUGUG---GGAcGCGc -3' miRNA: 3'- gCGCAGGGCa---UGGGCAUcuaCCU-CGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 122035 | 0.66 | 0.931499 |
Target: 5'- gGCGUCUCGUGCagcaucaCCGcgAGAUGGAu-- -3' miRNA: 3'- gCGCAGGGCAUG-------GGCa-UCUACCUcgu -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 143897 | 0.66 | 0.926937 |
Target: 5'- aGCGUCCUGUugACCUGc-GAcGGGGCc -3' miRNA: 3'- gCGCAGGGCA--UGGGCauCUaCCUCGu -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 90354 | 0.66 | 0.921654 |
Target: 5'- uGCGUCCUGUGCaCCGUGcgcGUGcaGGGCc -3' miRNA: 3'- gCGCAGGGCAUG-GGCAUc--UAC--CUCGu -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 53702 | 0.66 | 0.921654 |
Target: 5'- cCGCGUCCUGccacucGCCCucgGGGUGGAcccGCGc -3' miRNA: 3'- -GCGCAGGGCa-----UGGGca-UCUACCU---CGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 104448 | 0.66 | 0.919478 |
Target: 5'- cCGCGggcggCCCGaGCCCGggcggcgugugcaGGAUGcGGGCGg -3' miRNA: 3'- -GCGCa----GGGCaUGGGCa------------UCUAC-CUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 175562 | 0.67 | 0.898277 |
Target: 5'- gGCGaCCCGUuggaaacccGCCgGUGGugucaGUGGAGCu -3' miRNA: 3'- gCGCaGGGCA---------UGGgCAUC-----UACCUCGu -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 90979 | 0.67 | 0.891881 |
Target: 5'- gGCGUggcCUCGUACCgGgccgAGgcGGAGCGg -3' miRNA: 3'- gCGCA---GGGCAUGGgCa---UCuaCCUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 66255 | 0.67 | 0.878445 |
Target: 5'- gGCGaCCCGUccggcCCCGUAGAc-GAGCGg -3' miRNA: 3'- gCGCaGGGCAu----GGGCAUCUacCUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 488 | 0.68 | 0.841316 |
Target: 5'- gGCGUuuagCCCGUcGCCU--GGGUGGGGCGu -3' miRNA: 3'- gCGCA----GGGCA-UGGGcaUCUACCUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 195419 | 0.68 | 0.841316 |
Target: 5'- aCGCGUCCCG-AUCCGcacacGGAGCc -3' miRNA: 3'- -GCGCAGGGCaUGGGCaucuaCCUCGu -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 124472 | 0.68 | 0.841316 |
Target: 5'- gGCGUCgCCGccgcacGCCCGgaccgccGGAUGGAGUc -3' miRNA: 3'- gCGCAG-GGCa-----UGGGCa------UCUACCUCGu -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 129620 | 0.68 | 0.833327 |
Target: 5'- aCGUGUCaUCGUACCCacGGAgcGGAGCGg -3' miRNA: 3'- -GCGCAG-GGCAUGGGcaUCUa-CCUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 38622 | 0.68 | 0.833327 |
Target: 5'- gCGCGUCCCG-ACUCGccGGUGcGGCGc -3' miRNA: 3'- -GCGCAGGGCaUGGGCauCUACcUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 117471 | 0.68 | 0.833327 |
Target: 5'- gGuCGUCggCGUACUCGUGGAUGGcguGCAg -3' miRNA: 3'- gC-GCAGg-GCAUGGGCAUCUACCu--CGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 26634 | 0.69 | 0.822684 |
Target: 5'- cCGCGUCCgcgcacccggacggCGgccgGCUCGUcggcgGGGUGGAGCGc -3' miRNA: 3'- -GCGCAGG--------------GCa---UGGGCA-----UCUACCUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 136868 | 0.7 | 0.772974 |
Target: 5'- gGUGUUCUGgGCCCGgaucUGGAcgUGGAGCAg -3' miRNA: 3'- gCGCAGGGCaUGGGC----AUCU--ACCUCGU- -5' |
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11047 | 5' | -56.8 | NC_002794.1 | + | 65758 | 0.7 | 0.754541 |
Target: 5'- cCGCGcCgCCGccGCCCGUGG-UGGGGCc -3' miRNA: 3'- -GCGCaG-GGCa-UGGGCAUCuACCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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