miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11049 3' -50.5 NC_002794.1 + 195215 0.66 0.997933
Target:  5'- cCGcCAGcUGcGg--CAGCAGCCCgCGCg -3'
miRNA:   3'- -GC-GUCaAUaCaaaGUUGUCGGGgGCG- -5'
11049 3' -50.5 NC_002794.1 + 114030 0.66 0.997541
Target:  5'- gGCGGgg------CAGCGGCCgCCCGUa -3'
miRNA:   3'- gCGUCaauacaaaGUUGUCGG-GGGCG- -5'
11049 3' -50.5 NC_002794.1 + 151067 0.66 0.997541
Target:  5'- gCGCAGgucgcgGaUUUCcugAGCAGUCaCCCGCg -3'
miRNA:   3'- -GCGUCaaua--C-AAAG---UUGUCGG-GGGCG- -5'
11049 3' -50.5 NC_002794.1 + 118457 0.66 0.99709
Target:  5'- aGCGGUUGaGgUUCAGCAGCacguUCUGCc -3'
miRNA:   3'- gCGUCAAUaCaAAGUUGUCGg---GGGCG- -5'
11049 3' -50.5 NC_002794.1 + 58046 0.66 0.996734
Target:  5'- cCGCccguccccgUCGGCGGCCCCgGCg -3'
miRNA:   3'- -GCGucaauacaaAGUUGUCGGGGgCG- -5'
11049 3' -50.5 NC_002794.1 + 48856 0.67 0.995979
Target:  5'- gGCAGg---Gcg-CGAUAGUCCCCGUc -3'
miRNA:   3'- gCGUCaauaCaaaGUUGUCGGGGGCG- -5'
11049 3' -50.5 NC_002794.1 + 121897 0.67 0.995979
Target:  5'- uGCGGUacUGcgUCGACuggacgucGCCCgCCGCg -3'
miRNA:   3'- gCGUCAauACaaAGUUGu-------CGGG-GGCG- -5'
11049 3' -50.5 NC_002794.1 + 892 0.67 0.995306
Target:  5'- gCGCGGgccggGUgcCAACGccGCuCCCCGCg -3'
miRNA:   3'- -GCGUCaaua-CAaaGUUGU--CG-GGGGCG- -5'
11049 3' -50.5 NC_002794.1 + 130627 0.67 0.994544
Target:  5'- aCGguGUUcgGcgUCGcCGGCCcgCCCGCc -3'
miRNA:   3'- -GCguCAAuaCaaAGUuGUCGG--GGGCG- -5'
11049 3' -50.5 NC_002794.1 + 53991 0.67 0.993685
Target:  5'- cCGCGccagcGUcucCAGCAGCUCCCGCa -3'
miRNA:   3'- -GCGUcaauaCAaa-GUUGUCGGGGGCG- -5'
11049 3' -50.5 NC_002794.1 + 99101 0.67 0.993685
Target:  5'- aGCGGa-GUGccgugCGGCAGCCCCUGg -3'
miRNA:   3'- gCGUCaaUACaaa--GUUGUCGGGGGCg -5'
11049 3' -50.5 NC_002794.1 + 111222 0.67 0.993685
Target:  5'- aGCGGg---GUUUCAGCuGGCUCCacaCGCa -3'
miRNA:   3'- gCGUCaauaCAAAGUUG-UCGGGG---GCG- -5'
11049 3' -50.5 NC_002794.1 + 111777 0.67 0.993685
Target:  5'- gGCGGgcucGUUcgUCAGgAGCgCCCGCa -3'
miRNA:   3'- gCGUCaauaCAA--AGUUgUCGgGGGCG- -5'
11049 3' -50.5 NC_002794.1 + 3806 0.67 0.992721
Target:  5'- -cCGGgUcgGUgcCAACcGCCCCCGCa -3'
miRNA:   3'- gcGUCaAuaCAaaGUUGuCGGGGGCG- -5'
11049 3' -50.5 NC_002794.1 + 56159 0.68 0.991643
Target:  5'- cCGCAGc---Gg--CAGCGGCCCCgGUg -3'
miRNA:   3'- -GCGUCaauaCaaaGUUGUCGGGGgCG- -5'
11049 3' -50.5 NC_002794.1 + 72440 0.68 0.991643
Target:  5'- gGCGGag--GgacCGGCGGCgCCCCGCg -3'
miRNA:   3'- gCGUCaauaCaaaGUUGUCG-GGGGCG- -5'
11049 3' -50.5 NC_002794.1 + 111107 0.68 0.990442
Target:  5'- gGCGGgaccGUGgccgUCGACGGCgCCgGCg -3'
miRNA:   3'- gCGUCaa--UACaa--AGUUGUCGgGGgCG- -5'
11049 3' -50.5 NC_002794.1 + 41829 0.68 0.989109
Target:  5'- aGCAGgcccGUGgucgggucgaUCAGCAGCCCCagGCc -3'
miRNA:   3'- gCGUCaa--UACaa--------AGUUGUCGGGGg-CG- -5'
11049 3' -50.5 NC_002794.1 + 114982 0.68 0.987637
Target:  5'- gCGCAGgcguccUGUagUUCGcggaGCAGCUCUCGCa -3'
miRNA:   3'- -GCGUCaau---ACA--AAGU----UGUCGGGGGCG- -5'
11049 3' -50.5 NC_002794.1 + 38252 0.68 0.987166
Target:  5'- aGCGGggccuccugCGugaggcGCGGCCCCCGCg -3'
miRNA:   3'- gCGUCaauacaaa-GU------UGUCGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.