miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11049 5' -58.5 NC_002794.1 + 128030 0.66 0.864181
Target:  5'- -gGCuGACA-CCCCGcGGGCcacCGAUCa -3'
miRNA:   3'- caUGuCUGUcGGGGC-CCCGu--GCUAGa -5'
11049 5' -58.5 NC_002794.1 + 19437 0.66 0.864181
Target:  5'- -cGC-GACcaGGCCCCGagcGGGCACGAg-- -3'
miRNA:   3'- caUGuCUG--UCGGGGC---CCCGUGCUaga -5'
11049 5' -58.5 NC_002794.1 + 118929 0.66 0.863446
Target:  5'- -aGCAGGCGGUacacgagCCCGGGGUGCa---- -3'
miRNA:   3'- caUGUCUGUCG-------GGGCCCCGUGcuaga -5'
11049 5' -58.5 NC_002794.1 + 104483 0.66 0.856749
Target:  5'- aUGCGGGCGGCCaCGGcGGC-CgGGUCg -3'
miRNA:   3'- cAUGUCUGUCGGgGCC-CCGuG-CUAGa -5'
11049 5' -58.5 NC_002794.1 + 151954 0.66 0.856749
Target:  5'- -cGCGacGACGGCCCCGGGuGCuccuCGGc-- -3'
miRNA:   3'- caUGU--CUGUCGGGGCCC-CGu---GCUaga -5'
11049 5' -58.5 NC_002794.1 + 153057 0.66 0.849126
Target:  5'- -gGCGGACGGuCCCCGa-GCgACGGUCg -3'
miRNA:   3'- caUGUCUGUC-GGGGCccCG-UGCUAGa -5'
11049 5' -58.5 NC_002794.1 + 94279 0.66 0.833327
Target:  5'- -cGCGGcGCGGCCCgagCGGGGgGCGGcUCg -3'
miRNA:   3'- caUGUC-UGUCGGG---GCCCCgUGCU-AGa -5'
11049 5' -58.5 NC_002794.1 + 48627 0.66 0.833327
Target:  5'- -cGCGGAgCGGCCgUCGGGGCccGCGAg-- -3'
miRNA:   3'- caUGUCU-GUCGG-GGCCCCG--UGCUaga -5'
11049 5' -58.5 NC_002794.1 + 145996 0.66 0.833327
Target:  5'- --cCAGaACGGCCgCCGGGGC-CGGa-- -3'
miRNA:   3'- cauGUC-UGUCGG-GGCCCCGuGCUaga -5'
11049 5' -58.5 NC_002794.1 + 86848 0.67 0.825165
Target:  5'- ----cGGCGGCCCCGccGGGaUugGGUCUg -3'
miRNA:   3'- cauguCUGUCGGGGC--CCC-GugCUAGA- -5'
11049 5' -58.5 NC_002794.1 + 181871 0.67 0.825165
Target:  5'- -cGCuccGCuGCCCCGGGGuCGCGAa-- -3'
miRNA:   3'- caUGuc-UGuCGGGGCCCC-GUGCUaga -5'
11049 5' -58.5 NC_002794.1 + 55650 0.67 0.825165
Target:  5'- -gGCAGgcGCAGCCCCGacauGGuGCGCGccuUCUg -3'
miRNA:   3'- caUGUC--UGUCGGGGC----CC-CGUGCu--AGA- -5'
11049 5' -58.5 NC_002794.1 + 58060 0.67 0.816837
Target:  5'- ----cGGCGGCCCCGGcGGCgGCGGg-- -3'
miRNA:   3'- cauguCUGUCGGGGCC-CCG-UGCUaga -5'
11049 5' -58.5 NC_002794.1 + 192954 0.67 0.816837
Target:  5'- -cGCAGACAgGCCgacgagCCGugcaggaccaGGGCGCGGUCg -3'
miRNA:   3'- caUGUCUGU-CGG------GGC----------CCCGUGCUAGa -5'
11049 5' -58.5 NC_002794.1 + 49019 0.67 0.808351
Target:  5'- -cGCGG-CGGCCgCGGcgucguccGGCGCGGUCg -3'
miRNA:   3'- caUGUCuGUCGGgGCC--------CCGUGCUAGa -5'
11049 5' -58.5 NC_002794.1 + 30054 0.67 0.799714
Target:  5'- ---gAGACccgGGCCCgCGGGGUcCGGUCg -3'
miRNA:   3'- caugUCUG---UCGGG-GCCCCGuGCUAGa -5'
11049 5' -58.5 NC_002794.1 + 3240 0.67 0.785599
Target:  5'- -aGCGGGCGGUCCCccacccacucccaccGGGGguCGAUUc -3'
miRNA:   3'- caUGUCUGUCGGGG---------------CCCCguGCUAGa -5'
11049 5' -58.5 NC_002794.1 + 136712 0.67 0.782017
Target:  5'- gGUGCAGGCgccGGUCCCGGcGUccagGCGGUCg -3'
miRNA:   3'- -CAUGUCUG---UCGGGGCCcCG----UGCUAGa -5'
11049 5' -58.5 NC_002794.1 + 177716 0.68 0.772974
Target:  5'- cUACGG-CGGUCCaCGGGGCG-GAUCc -3'
miRNA:   3'- cAUGUCuGUCGGG-GCCCCGUgCUAGa -5'
11049 5' -58.5 NC_002794.1 + 131191 0.68 0.772974
Target:  5'- -gACAGcACGGCgCCGGGGCGgcgcCGGUg- -3'
miRNA:   3'- caUGUC-UGUCGgGGCCCCGU----GCUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.