Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11050 | 3' | -55.6 | NC_002794.1 | + | 192153 | 0.66 | 0.958594 |
Target: 5'- gCGCGGucGCGGcGGAGCcuGCGGuaGGUCc -3' miRNA: 3'- -GUGCUu-CGCCuUCUCG--UGCUggCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 139717 | 0.66 | 0.958594 |
Target: 5'- uUACGAGGaucaGGAacGGcAGCACGccgaCGGUCa -3' miRNA: 3'- -GUGCUUCg---CCU--UC-UCGUGCug--GCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 33701 | 0.66 | 0.958594 |
Target: 5'- -uCGuGGCGGgcGAGC-CG-CUGGUCu -3' miRNA: 3'- guGCuUCGCCuuCUCGuGCuGGCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 36927 | 0.66 | 0.958594 |
Target: 5'- cCGCGAccGCGGAGGAGaaaGuCCGcGUCg -3' miRNA: 3'- -GUGCUu-CGCCUUCUCgugCuGGC-CAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 54924 | 0.66 | 0.958594 |
Target: 5'- aCGCGcAGCGuccgcAGCGCGACCguGGUCa -3' miRNA: 3'- -GUGCuUCGCcuuc-UCGUGCUGG--CCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 143500 | 0.66 | 0.958594 |
Target: 5'- cCGCGggGCugcagaugaGGAAGcGCACGucgcCCGcGUCc -3' miRNA: 3'- -GUGCuuCG---------CCUUCuCGUGCu---GGC-CAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87115 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87157 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87136 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87199 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87241 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87220 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87178 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 87262 | 0.66 | 0.954876 |
Target: 5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3' miRNA: 3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 122940 | 0.66 | 0.954876 |
Target: 5'- --aGGAGCGGAAccGGUGCGGCUGGa- -3' miRNA: 3'- gugCUUCGCCUUc-UCGUGCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 84293 | 0.66 | 0.954876 |
Target: 5'- aCGgGGAGCGGcGGcGCuuccugGCGACCGGg- -3' miRNA: 3'- -GUgCUUCGCCuUCuCG------UGCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 44345 | 0.66 | 0.954876 |
Target: 5'- gACGGcgccGGCGaGAccgAGAGCGCGGCgGG-Cg -3' miRNA: 3'- gUGCU----UCGC-CU---UCUCGUGCUGgCCaG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 47811 | 0.66 | 0.950939 |
Target: 5'- gGCGAacaGGCGGAcgAGGG-ACGGgaagcagcuCCGGUCg -3' miRNA: 3'- gUGCU---UCGCCU--UCUCgUGCU---------GGCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 58751 | 0.66 | 0.950939 |
Target: 5'- aACGGgcagcuGGCGGAGGAGC-CGcuGCUGGcCu -3' miRNA: 3'- gUGCU------UCGCCUUCUCGuGC--UGGCCaG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 36998 | 0.66 | 0.946779 |
Target: 5'- gGCGAGGCGGAcccGGuAGaGCGGCuCGGg- -3' miRNA: 3'- gUGCUUCGCCU---UC-UCgUGCUG-GCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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