miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 54924 0.66 0.958594
Target:  5'- aCGCGcAGCGuccgcAGCGCGACCguGGUCa -3'
miRNA:   3'- -GUGCuUCGCcuuc-UCGUGCUGG--CCAG- -5'
11050 3' -55.6 NC_002794.1 + 36927 0.66 0.958594
Target:  5'- cCGCGAccGCGGAGGAGaaaGuCCGcGUCg -3'
miRNA:   3'- -GUGCUu-CGCCUUCUCgugCuGGC-CAG- -5'
11050 3' -55.6 NC_002794.1 + 33701 0.66 0.958594
Target:  5'- -uCGuGGCGGgcGAGC-CG-CUGGUCu -3'
miRNA:   3'- guGCuUCGCCuuCUCGuGCuGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 139717 0.66 0.958594
Target:  5'- uUACGAGGaucaGGAacGGcAGCACGccgaCGGUCa -3'
miRNA:   3'- -GUGCUUCg---CCU--UC-UCGUGCug--GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 44345 0.66 0.954876
Target:  5'- gACGGcgccGGCGaGAccgAGAGCGCGGCgGG-Cg -3'
miRNA:   3'- gUGCU----UCGC-CU---UCUCGUGCUGgCCaG- -5'
11050 3' -55.6 NC_002794.1 + 84293 0.66 0.954876
Target:  5'- aCGgGGAGCGGcGGcGCuuccugGCGACCGGg- -3'
miRNA:   3'- -GUgCUUCGCCuUCuCG------UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 122940 0.66 0.954876
Target:  5'- --aGGAGCGGAAccGGUGCGGCUGGa- -3'
miRNA:   3'- gugCUUCGCCUUc-UCGUGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87136 0.66 0.954876
Target:  5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3'
miRNA:   3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87199 0.66 0.954876
Target:  5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3'
miRNA:   3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87241 0.66 0.954876
Target:  5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3'
miRNA:   3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87220 0.66 0.954876
Target:  5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3'
miRNA:   3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87178 0.66 0.954876
Target:  5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3'
miRNA:   3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87262 0.66 0.954876
Target:  5'- gGCG-GGUGGggGuGCA-GGCCGGg- -3'
miRNA:   3'- gUGCuUCGCCuuCuCGUgCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87079 0.67 0.932933
Target:  5'- gCACGGugcaggccgGGCGGGugGGGGUGCaGGCCGGg- -3'
miRNA:   3'- -GUGCU---------UCGCCU--UCUCGUG-CUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 51213 0.67 0.927857
Target:  5'- cCGCGGAGCGGccG-GC-CGGCCgaugggaaacGGUCg -3'
miRNA:   3'- -GUGCUUCGCCuuCuCGuGCUGG----------CCAG- -5'
11050 3' -55.6 NC_002794.1 + 56336 0.67 0.927857
Target:  5'- gGCGAcGCGGcgAAGAGCAgcuCGAagaggCGGUCg -3'
miRNA:   3'- gUGCUuCGCC--UUCUCGU---GCUg----GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 38605 0.67 0.932933
Target:  5'- gACGAgaGGcCGGAcGGGCGCGucccgacucGCCGGUg -3'
miRNA:   3'- gUGCU--UC-GCCUuCUCGUGC---------UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 94223 0.67 0.932933
Target:  5'- gGCGgcGaCGGgcGGGCG-GGCCGGUg -3'
miRNA:   3'- gUGCuuC-GCCuuCUCGUgCUGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 187802 0.67 0.932933
Target:  5'- cCGCGAAGCGagcgagcgaguGAgcGGAGCGCGcUCGGcUCg -3'
miRNA:   3'- -GUGCUUCGC-----------CU--UCUCGUGCuGGCC-AG- -5'
11050 3' -55.6 NC_002794.1 + 94880 0.67 0.927857
Target:  5'- uUACGGAGCGGAuccGGC-UGA-CGGUCg -3'
miRNA:   3'- -GUGCUUCGCCUuc-UCGuGCUgGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.