Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11050 | 3' | -55.6 | NC_002794.1 | + | 38468 | 0.78 | 0.397962 |
Target: 5'- cCGCGGcgcgcccuuuaugGGCGGAGGaAGCGCGgcggcGCCGGUCg -3' miRNA: 3'- -GUGCU-------------UCGCCUUC-UCGUGC-----UGGCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 126620 | 0.78 | 0.374193 |
Target: 5'- gACGucGCGGcguGAGCGCGACCGGg- -3' miRNA: 3'- gUGCuuCGCCuu-CUCGUGCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 63312 | 0.77 | 0.442031 |
Target: 5'- aACGAaccgauccGGCGGggGgcccgAGCGCgGACCGGUCg -3' miRNA: 3'- gUGCU--------UCGCCuuC-----UCGUG-CUGGCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 137846 | 0.77 | 0.433172 |
Target: 5'- cCAgGAGGCGGAuGGAGCGCGACCa--- -3' miRNA: 3'- -GUgCUUCGCCU-UCUCGUGCUGGccag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 37325 | 0.75 | 0.516295 |
Target: 5'- gACGGAGCGGuGGGGCccggGCGGCagcaGGUCg -3' miRNA: 3'- gUGCUUCGCCuUCUCG----UGCUGg---CCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 92301 | 0.75 | 0.535664 |
Target: 5'- gACGAGGCGGGgcuGGGCGCGGgCGG-Cg -3' miRNA: 3'- gUGCUUCGCCUu--CUCGUGCUgGCCaG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 116050 | 0.75 | 0.535664 |
Target: 5'- aGCGcAG-GGggGAGCGCGACUggGGUCg -3' miRNA: 3'- gUGCuUCgCCuuCUCGUGCUGG--CCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 98921 | 0.75 | 0.535664 |
Target: 5'- uCAUG-AGCGGGcuGGGCGCGGCCGGg- -3' miRNA: 3'- -GUGCuUCGCCUu-CUCGUGCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 108353 | 0.75 | 0.535664 |
Target: 5'- gGCGGAGCGGGgagcGGAGgAgGACCGGg- -3' miRNA: 3'- gUGCUUCGCCU----UCUCgUgCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 156423 | 0.75 | 0.555281 |
Target: 5'- cCACGGccGGCGGguGAGa--GACCGGUCg -3' miRNA: 3'- -GUGCU--UCGCCuuCUCgugCUGGCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 183423 | 0.74 | 0.56517 |
Target: 5'- --aGAAGCGGGagcgGGAGCGgGACCGG-Cg -3' miRNA: 3'- gugCUUCGCCU----UCUCGUgCUGGCCaG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 128601 | 0.74 | 0.585076 |
Target: 5'- -cUGAGGCGGcAGGAGCGCcugaACCGGUUg -3' miRNA: 3'- guGCUUCGCC-UUCUCGUGc---UGGCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 95802 | 0.74 | 0.575103 |
Target: 5'- gGCGGAGgaacCGGggGAGCggcgGCGGCCGGg- -3' miRNA: 3'- gUGCUUC----GCCuuCUCG----UGCUGGCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 183597 | 0.74 | 0.59408 |
Target: 5'- --gGggGCGGAGGGgggccgcGCGCGGCCGG-Cg -3' miRNA: 3'- gugCuuCGCCUUCU-------CGUGCUGGCCaG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 54237 | 0.74 | 0.56517 |
Target: 5'- gAUGAAGCGGccGAGCGCGcgguccacggcGCCGcGUCg -3' miRNA: 3'- gUGCUUCGCCuuCUCGUGC-----------UGGC-CAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 37541 | 0.74 | 0.585076 |
Target: 5'- gGCGAacAGCcgccGGAGGGGcCACGACCGcGUCu -3' miRNA: 3'- gUGCU--UCG----CCUUCUC-GUGCUGGC-CAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 157309 | 0.73 | 0.66546 |
Target: 5'- aCACGcGGCGcucgaagacGAAGAcGCGCGuCCGGUCg -3' miRNA: 3'- -GUGCuUCGC---------CUUCU-CGUGCuGGCCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 145886 | 0.73 | 0.645365 |
Target: 5'- cCGCGAgaAGCGGc-GAGCGCGACgGGg- -3' miRNA: 3'- -GUGCU--UCGCCuuCUCGUGCUGgCCag -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 105018 | 0.72 | 0.675472 |
Target: 5'- gAgGGAGCGGAGGAuguGCACGugCugcagGGUCa -3' miRNA: 3'- gUgCUUCGCCUUCU---CGUGCugG-----CCAG- -5' |
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11050 | 3' | -55.6 | NC_002794.1 | + | 32633 | 0.72 | 0.695385 |
Target: 5'- gACGAAGa-GggGGGCgACGACCGGg- -3' miRNA: 3'- gUGCUUCgcCuuCUCG-UGCUGGCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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