miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 126620 0.78 0.374193
Target:  5'- gACGucGCGGcguGAGCGCGACCGGg- -3'
miRNA:   3'- gUGCuuCGCCuu-CUCGUGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 38468 0.78 0.397962
Target:  5'- cCGCGGcgcgcccuuuaugGGCGGAGGaAGCGCGgcggcGCCGGUCg -3'
miRNA:   3'- -GUGCU-------------UCGCCUUC-UCGUGC-----UGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 137846 0.77 0.433172
Target:  5'- cCAgGAGGCGGAuGGAGCGCGACCa--- -3'
miRNA:   3'- -GUgCUUCGCCU-UCUCGUGCUGGccag -5'
11050 3' -55.6 NC_002794.1 + 63312 0.77 0.442031
Target:  5'- aACGAaccgauccGGCGGggGgcccgAGCGCgGACCGGUCg -3'
miRNA:   3'- gUGCU--------UCGCCuuC-----UCGUG-CUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 37325 0.75 0.516295
Target:  5'- gACGGAGCGGuGGGGCccggGCGGCagcaGGUCg -3'
miRNA:   3'- gUGCUUCGCCuUCUCG----UGCUGg---CCAG- -5'
11050 3' -55.6 NC_002794.1 + 98921 0.75 0.535664
Target:  5'- uCAUG-AGCGGGcuGGGCGCGGCCGGg- -3'
miRNA:   3'- -GUGCuUCGCCUu-CUCGUGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 92301 0.75 0.535664
Target:  5'- gACGAGGCGGGgcuGGGCGCGGgCGG-Cg -3'
miRNA:   3'- gUGCUUCGCCUu--CUCGUGCUgGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 108353 0.75 0.535664
Target:  5'- gGCGGAGCGGGgagcGGAGgAgGACCGGg- -3'
miRNA:   3'- gUGCUUCGCCU----UCUCgUgCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 116050 0.75 0.535664
Target:  5'- aGCGcAG-GGggGAGCGCGACUggGGUCg -3'
miRNA:   3'- gUGCuUCgCCuuCUCGUGCUGG--CCAG- -5'
11050 3' -55.6 NC_002794.1 + 156423 0.75 0.555281
Target:  5'- cCACGGccGGCGGguGAGa--GACCGGUCg -3'
miRNA:   3'- -GUGCU--UCGCCuuCUCgugCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 183423 0.74 0.56517
Target:  5'- --aGAAGCGGGagcgGGAGCGgGACCGG-Cg -3'
miRNA:   3'- gugCUUCGCCU----UCUCGUgCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 54237 0.74 0.56517
Target:  5'- gAUGAAGCGGccGAGCGCGcgguccacggcGCCGcGUCg -3'
miRNA:   3'- gUGCUUCGCCuuCUCGUGC-----------UGGC-CAG- -5'
11050 3' -55.6 NC_002794.1 + 95802 0.74 0.575103
Target:  5'- gGCGGAGgaacCGGggGAGCggcgGCGGCCGGg- -3'
miRNA:   3'- gUGCUUC----GCCuuCUCG----UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 128601 0.74 0.585076
Target:  5'- -cUGAGGCGGcAGGAGCGCcugaACCGGUUg -3'
miRNA:   3'- guGCUUCGCC-UUCUCGUGc---UGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 37541 0.74 0.585076
Target:  5'- gGCGAacAGCcgccGGAGGGGcCACGACCGcGUCu -3'
miRNA:   3'- gUGCU--UCG----CCUUCUC-GUGCUGGC-CAG- -5'
11050 3' -55.6 NC_002794.1 + 183597 0.74 0.59408
Target:  5'- --gGggGCGGAGGGgggccgcGCGCGGCCGG-Cg -3'
miRNA:   3'- gugCuuCGCCUUCU-------CGUGCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 145886 0.73 0.645365
Target:  5'- cCGCGAgaAGCGGc-GAGCGCGACgGGg- -3'
miRNA:   3'- -GUGCU--UCGCCuuCUCGUGCUGgCCag -5'
11050 3' -55.6 NC_002794.1 + 157309 0.73 0.66546
Target:  5'- aCACGcGGCGcucgaagacGAAGAcGCGCGuCCGGUCg -3'
miRNA:   3'- -GUGCuUCGC---------CUUCU-CGUGCuGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 105018 0.72 0.675472
Target:  5'- gAgGGAGCGGAGGAuguGCACGugCugcagGGUCa -3'
miRNA:   3'- gUgCUUCGCCUUCU---CGUGCugG-----CCAG- -5'
11050 3' -55.6 NC_002794.1 + 56282 0.72 0.684454
Target:  5'- aGC-AGGCGGcAGAGCACGAUgcgcgcgCGGUCg -3'
miRNA:   3'- gUGcUUCGCCuUCUCGUGCUG-------GCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.