miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 103431 0.72 0.68545
Target:  5'- gCACGAuguAGUagaacuGGAAGAGCuGCGGCUGGUUg -3'
miRNA:   3'- -GUGCU---UCG------CCUUCUCG-UGCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 32633 0.72 0.695385
Target:  5'- gACGAAGa-GggGGGCgACGACCGGg- -3'
miRNA:   3'- gUGCUUCgcCuuCUCG-UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 30065 0.72 0.704284
Target:  5'- cCGCGggGUccGGucgcccggucgacGAGGcGCGCGGCCGGUCc -3'
miRNA:   3'- -GUGCuuCG--CC-------------UUCU-CGUGCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 147810 0.72 0.70527
Target:  5'- aCGCuGAAGCGGcuccAGAGCACcuuGCCGGUg -3'
miRNA:   3'- -GUG-CUUCGCCu---UCUCGUGc--UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 180870 0.72 0.70527
Target:  5'- --gGAGGCGGcGGAuccgGCGCGcCCGGUCu -3'
miRNA:   3'- gugCUUCGCCuUCU----CGUGCuGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 118970 0.71 0.72485
Target:  5'- gACGGucaGGUGGcGGAGCACGuCCGGg- -3'
miRNA:   3'- gUGCU---UCGCCuUCUCGUGCuGGCCag -5'
11050 3' -55.6 NC_002794.1 + 98471 0.71 0.72485
Target:  5'- gACGGGaCGGAAGAGCAgGGCCaGUUc -3'
miRNA:   3'- gUGCUUcGCCUUCUCGUgCUGGcCAG- -5'
11050 3' -55.6 NC_002794.1 + 30684 0.71 0.72485
Target:  5'- gCACGuccGGCGGAcGuGCACGuuccGCCGGUUg -3'
miRNA:   3'- -GUGCu--UCGCCUuCuCGUGC----UGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 872 0.71 0.753618
Target:  5'- cCGCGAGGCGGucGGcgugcGCGCGgGCCGGg- -3'
miRNA:   3'- -GUGCUUCGCCuuCU-----CGUGC-UGGCCag -5'
11050 3' -55.6 NC_002794.1 + 120186 0.71 0.763013
Target:  5'- cCGCcAAGCGGuucAAGGGCACGAgCGGg- -3'
miRNA:   3'- -GUGcUUCGCC---UUCUCGUGCUgGCCag -5'
11050 3' -55.6 NC_002794.1 + 145920 0.71 0.763013
Target:  5'- cCGCGccGAGCGGAGGGGC-CGGCgagagCGGUUc -3'
miRNA:   3'- -GUGC--UUCGCCUUCUCGuGCUG-----GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 125452 0.71 0.763013
Target:  5'- gGCGAcGGCGGc-GAGCACGGCCGcGa- -3'
miRNA:   3'- gUGCU-UCGCCuuCUCGUGCUGGC-Cag -5'
11050 3' -55.6 NC_002794.1 + 43997 0.71 0.772294
Target:  5'- gACGu-GUGGGAGcacGGCGCGGCCGG-Cg -3'
miRNA:   3'- gUGCuuCGCCUUC---UCGUGCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 20390 0.7 0.781454
Target:  5'- aCGCGGugcGGCGGGaccgGGAGCGgGGCCacacGGUCu -3'
miRNA:   3'- -GUGCU---UCGCCU----UCUCGUgCUGG----CCAG- -5'
11050 3' -55.6 NC_002794.1 + 143423 0.7 0.790485
Target:  5'- gGCGAAGgucCGGAAGgccAGCAUGA-CGGUCa -3'
miRNA:   3'- gUGCUUC---GCCUUC---UCGUGCUgGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 103680 0.7 0.798495
Target:  5'- --gGAAGUGGAAGGGCAgCGagauggccuccuuGCCGGUg -3'
miRNA:   3'- gugCUUCGCCUUCUCGU-GC-------------UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 129687 0.7 0.799378
Target:  5'- uCGCGggGUgcuGGAcaccauguGGGGCAucCGGCCGGUUa -3'
miRNA:   3'- -GUGCuuCG---CCU--------UCUCGU--GCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 106311 0.7 0.799378
Target:  5'- gACGAcgAGCGcGAcGcGCGCGACgGGUCg -3'
miRNA:   3'- gUGCU--UCGC-CUuCuCGUGCUGgCCAG- -5'
11050 3' -55.6 NC_002794.1 + 14585 0.7 0.808124
Target:  5'- -cCGAAGCGGGccguggcGAGCGCG-CCGGg- -3'
miRNA:   3'- guGCUUCGCCUu------CUCGUGCuGGCCag -5'
11050 3' -55.6 NC_002794.1 + 105803 0.7 0.808124
Target:  5'- -uCGGAGaCGGAccgaaAGCGCGACCgGGUCg -3'
miRNA:   3'- guGCUUC-GCCUuc---UCGUGCUGG-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.