miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 36998 0.66 0.946779
Target:  5'- gGCGAGGCGGAcccGGuAGaGCGGCuCGGg- -3'
miRNA:   3'- gUGCUUCGCCU---UC-UCgUGCUG-GCCag -5'
11050 3' -55.6 NC_002794.1 + 100746 0.66 0.946779
Target:  5'- gCGCGGAGCGcGucuaucGCugG-CCGGUCg -3'
miRNA:   3'- -GUGCUUCGC-Cuucu--CGugCuGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 154376 0.66 0.945487
Target:  5'- cCGCGGcGGCGGc-GGGCACGcccguucgcgugguGCCGGUg -3'
miRNA:   3'- -GUGCU-UCGCCuuCUCGUGC--------------UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 122504 0.66 0.942392
Target:  5'- gGCGccGCaGGAGGGCuucucCGGCCGGaUCg -3'
miRNA:   3'- gUGCuuCGcCUUCUCGu----GCUGGCC-AG- -5'
11050 3' -55.6 NC_002794.1 + 94068 0.66 0.942392
Target:  5'- gGCGggGgGcGAGGGCaccuACGACCuGUCg -3'
miRNA:   3'- gUGCuuCgCcUUCUCG----UGCUGGcCAG- -5'
11050 3' -55.6 NC_002794.1 + 94446 0.66 0.942392
Target:  5'- cUACGgcGCGGAGGAGUcggugGCGAC-GG-Ca -3'
miRNA:   3'- -GUGCuuCGCCUUCUCG-----UGCUGgCCaG- -5'
11050 3' -55.6 NC_002794.1 + 116629 0.66 0.942392
Target:  5'- gGCGGuagAGCGGcAGGGGCcCGGCC-GUCc -3'
miRNA:   3'- gUGCU---UCGCC-UUCUCGuGCUGGcCAG- -5'
11050 3' -55.6 NC_002794.1 + 13046 0.66 0.939651
Target:  5'- gGCGucuGCGGAaccccacuauuugagGGGGCcgcGCGACCGG-Cg -3'
miRNA:   3'- gUGCuu-CGCCU---------------UCUCG---UGCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 129878 0.66 0.937777
Target:  5'- gCACGAGaaguggacGCGGGAGAGCgaACGgcGCUGGg- -3'
miRNA:   3'- -GUGCUU--------CGCCUUCUCG--UGC--UGGCCag -5'
11050 3' -55.6 NC_002794.1 + 95883 0.66 0.937777
Target:  5'- gGCGAcccGGCGGcGAGGgcGCACGACgUGGUg -3'
miRNA:   3'- gUGCU---UCGCC-UUCU--CGUGCUG-GCCAg -5'
11050 3' -55.6 NC_002794.1 + 138087 0.66 0.937777
Target:  5'- gGCGAugcagaagcGGCGGAccgucugcaGGAGgGCGuggugcucgucGCCGGUCu -3'
miRNA:   3'- gUGCU---------UCGCCU---------UCUCgUGC-----------UGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 91220 0.66 0.937777
Target:  5'- aCGCGAcGGCGGAc-GGCGCGGCgGccGUCg -3'
miRNA:   3'- -GUGCU-UCGCCUucUCGUGCUGgC--CAG- -5'
11050 3' -55.6 NC_002794.1 + 149300 0.66 0.937303
Target:  5'- uCACGGggGGCGGGuguagguAGGGCAagucgGACCGGa- -3'
miRNA:   3'- -GUGCU--UCGCCU-------UCUCGUg----CUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 87079 0.67 0.932933
Target:  5'- gCACGGugcaggccgGGCGGGugGGGGUGCaGGCCGGg- -3'
miRNA:   3'- -GUGCU---------UCGCCU--UCUCGUG-CUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 38605 0.67 0.932933
Target:  5'- gACGAgaGGcCGGAcGGGCGCGucccgacucGCCGGUg -3'
miRNA:   3'- gUGCU--UC-GCCUuCUCGUGC---------UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 94223 0.67 0.932933
Target:  5'- gGCGgcGaCGGgcGGGCG-GGCCGGUg -3'
miRNA:   3'- gUGCuuC-GCCuuCUCGUgCUGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 187802 0.67 0.932933
Target:  5'- cCGCGAAGCGagcgagcgaguGAgcGGAGCGCGcUCGGcUCg -3'
miRNA:   3'- -GUGCUUCGC-----------CU--UCUCGUGCuGGCC-AG- -5'
11050 3' -55.6 NC_002794.1 + 64814 0.67 0.932933
Target:  5'- cCGCGGacGGCGGc-GAGCcggcgccgACGACCGGa- -3'
miRNA:   3'- -GUGCU--UCGCCuuCUCG--------UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 51213 0.67 0.927857
Target:  5'- cCGCGGAGCGGccG-GC-CGGCCgaugggaaacGGUCg -3'
miRNA:   3'- -GUGCUUCGCCuuCuCGuGCUGG----------CCAG- -5'
11050 3' -55.6 NC_002794.1 + 94880 0.67 0.927857
Target:  5'- uUACGGAGCGGAuccGGC-UGA-CGGUCg -3'
miRNA:   3'- -GUGCUUCGCCUuc-UCGuGCUgGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.