miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 51213 0.67 0.927857
Target:  5'- cCGCGGAGCGGccG-GC-CGGCCgaugggaaacGGUCg -3'
miRNA:   3'- -GUGCUUCGCCuuCuCGuGCUGG----------CCAG- -5'
11050 3' -55.6 NC_002794.1 + 56336 0.67 0.927857
Target:  5'- gGCGAcGCGGcgAAGAGCAgcuCGAagaggCGGUCg -3'
miRNA:   3'- gUGCUuCGCC--UUCUCGU---GCUg----GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 21549 0.67 0.9247
Target:  5'- -cCGGAGCGGGgaaaaaguccuccucGGGuucgucguGCGCGACCGGg- -3'
miRNA:   3'- guGCUUCGCCU---------------UCU--------CGUGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 107878 0.67 0.922549
Target:  5'- -----cGCGGAGGcGGCGCGGCgGGUg -3'
miRNA:   3'- gugcuuCGCCUUC-UCGUGCUGgCCAg -5'
11050 3' -55.6 NC_002794.1 + 34724 0.67 0.922549
Target:  5'- cCACGAGGCGcGGgcggccgcAGAGCGCGcgacgGCgCGGUg -3'
miRNA:   3'- -GUGCUUCGC-CU--------UCUCGUGC-----UG-GCCAg -5'
11050 3' -55.6 NC_002794.1 + 109151 0.67 0.922549
Target:  5'- gGgGAGGCGGggGAGaugGCGACgagcggCGGUa -3'
miRNA:   3'- gUgCUUCGCCuuCUCg--UGCUG------GCCAg -5'
11050 3' -55.6 NC_002794.1 + 141361 0.67 0.922549
Target:  5'- gACGAgAGCGGcgGAGAGaacgGCGACCGuccGUCg -3'
miRNA:   3'- gUGCU-UCGCC--UUCUCg---UGCUGGC---CAG- -5'
11050 3' -55.6 NC_002794.1 + 182429 0.67 0.922549
Target:  5'- aCACGGAcaccacGCGGAucucggucucggAGAGCGCGG-CGGUg -3'
miRNA:   3'- -GUGCUU------CGCCU------------UCUCGUGCUgGCCAg -5'
11050 3' -55.6 NC_002794.1 + 185177 0.67 0.922549
Target:  5'- gCGCGgcGCGGucGGcGCGguCGGCgCGGUCa -3'
miRNA:   3'- -GUGCuuCGCCuuCU-CGU--GCUG-GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 141656 0.67 0.922549
Target:  5'- cCGCGGccgccGGCGGGucGAGCgaaGACgGGUCg -3'
miRNA:   3'- -GUGCU-----UCGCCUu-CUCGug-CUGgCCAG- -5'
11050 3' -55.6 NC_002794.1 + 99576 0.67 0.917011
Target:  5'- gGCGAGGgGGGugcggAGGGCGCGGCggCGG-Cg -3'
miRNA:   3'- gUGCUUCgCCU-----UCUCGUGCUG--GCCaG- -5'
11050 3' -55.6 NC_002794.1 + 131015 0.67 0.917011
Target:  5'- uCACGGgucGGUGGucGugcGGCGCGGCCGGc- -3'
miRNA:   3'- -GUGCU---UCGCCuuC---UCGUGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 110055 0.67 0.911242
Target:  5'- uCGCGGAuccGUcGGAGAGCGCGGaucgCGGUCg -3'
miRNA:   3'- -GUGCUU---CGcCUUCUCGUGCUg---GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 68484 0.67 0.911242
Target:  5'- gCACgGAGGCGGccGAGC-CGGCCGu-- -3'
miRNA:   3'- -GUG-CUUCGCCuuCUCGuGCUGGCcag -5'
11050 3' -55.6 NC_002794.1 + 129241 0.67 0.910652
Target:  5'- gGCGGcuccGGCGGAcucgggucGAGCGCcucgucgugagcgGGCCGGUCu -3'
miRNA:   3'- gUGCU----UCGCCUu-------CUCGUG-------------CUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 85256 0.67 0.91006
Target:  5'- --aGAAGCaaggugGGAAGAGCACaccucucggcuCCGGUCa -3'
miRNA:   3'- gugCUUCG------CCUUCUCGUGcu---------GGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 116075 0.67 0.905244
Target:  5'- nCGCGGAGCGcuc-GGCGCGG-CGGUCg -3'
miRNA:   3'- -GUGCUUCGCcuucUCGUGCUgGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 101565 0.67 0.905244
Target:  5'- aACGccGGCGGGAGuGCcggccgccGCGGCCGGg- -3'
miRNA:   3'- gUGCu-UCGCCUUCuCG--------UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 182341 0.68 0.899019
Target:  5'- gGCG-AGCGGAcGGGCGggcgggUGACCGGg- -3'
miRNA:   3'- gUGCuUCGCCUuCUCGU------GCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 95486 0.68 0.899019
Target:  5'- gUACGuuGCGGAAcGAGCuCGGCCaGUa -3'
miRNA:   3'- -GUGCuuCGCCUU-CUCGuGCUGGcCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.