miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 872 0.71 0.753618
Target:  5'- cCGCGAGGCGGucGGcgugcGCGCGgGCCGGg- -3'
miRNA:   3'- -GUGCUUCGCCuuCU-----CGUGC-UGGCCag -5'
11050 3' -55.6 NC_002794.1 + 3763 0.69 0.849387
Target:  5'- gGCGggGCGGggGAGUgacucaGCGGgagcccuucugaUUGGUCc -3'
miRNA:   3'- gUGCuuCGCCuuCUCG------UGCU------------GGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 9067 0.69 0.833405
Target:  5'- gGCGcAGGCGauccgagacuuGGAGAGCgGCGACCGGg- -3'
miRNA:   3'- gUGC-UUCGC-----------CUUCUCG-UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 11534 0.68 0.89257
Target:  5'- uGCG-GGCGaccGAGGAcCGCGGCUGGUCg -3'
miRNA:   3'- gUGCuUCGC---CUUCUcGUGCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 13046 0.66 0.939651
Target:  5'- gGCGucuGCGGAaccccacuauuugagGGGGCcgcGCGACCGG-Cg -3'
miRNA:   3'- gUGCuu-CGCCU---------------UCUCG---UGCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 14585 0.7 0.808124
Target:  5'- -cCGAAGCGGGccguggcGAGCGCG-CCGGg- -3'
miRNA:   3'- guGCUUCGCCUu------CUCGUGCuGGCCag -5'
11050 3' -55.6 NC_002794.1 + 19457 0.69 0.857094
Target:  5'- gCACGAgcGGCGGcGGcGGCGgGacccGCCGGUCg -3'
miRNA:   3'- -GUGCU--UCGCCuUC-UCGUgC----UGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 20390 0.7 0.781454
Target:  5'- aCGCGGugcGGCGGGaccgGGAGCGgGGCCacacGGUCu -3'
miRNA:   3'- -GUGCU---UCGCCU----UCUCGUgCUGG----CCAG- -5'
11050 3' -55.6 NC_002794.1 + 21549 0.67 0.9247
Target:  5'- -cCGGAGCGGGgaaaaaguccuccucGGGuucgucguGCGCGACCGGg- -3'
miRNA:   3'- guGCUUCGCCU---------------UCU--------CGUGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 30065 0.72 0.704284
Target:  5'- cCGCGggGUccGGucgcccggucgacGAGGcGCGCGGCCGGUCc -3'
miRNA:   3'- -GUGCuuCG--CC-------------UUCU-CGUGCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 30684 0.71 0.72485
Target:  5'- gCACGuccGGCGGAcGuGCACGuuccGCCGGUUg -3'
miRNA:   3'- -GUGCu--UCGCCUuCuCGUGC----UGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 32633 0.72 0.695385
Target:  5'- gACGAAGa-GggGGGCgACGACCGGg- -3'
miRNA:   3'- gUGCUUCgcCuuCUCG-UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 32898 0.68 0.89257
Target:  5'- uCAUGGAGCGGAaccAGucGgGCGGCagcaGGUCg -3'
miRNA:   3'- -GUGCUUCGCCU---UCu-CgUGCUGg---CCAG- -5'
11050 3' -55.6 NC_002794.1 + 33701 0.66 0.958594
Target:  5'- -uCGuGGCGGgcGAGC-CG-CUGGUCu -3'
miRNA:   3'- guGCuUCGCCuuCUCGuGCuGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 34724 0.67 0.922549
Target:  5'- cCACGAGGCGcGGgcggccgcAGAGCGCGcgacgGCgCGGUg -3'
miRNA:   3'- -GUGCUUCGC-CU--------UCUCGUGC-----UG-GCCAg -5'
11050 3' -55.6 NC_002794.1 + 36426 0.7 0.816716
Target:  5'- gAUGAAGCGGAAGAcCAgGcGCCGGa- -3'
miRNA:   3'- gUGCUUCGCCUUCUcGUgC-UGGCCag -5'
11050 3' -55.6 NC_002794.1 + 36927 0.66 0.958594
Target:  5'- cCGCGAccGCGGAGGAGaaaGuCCGcGUCg -3'
miRNA:   3'- -GUGCUu-CGCCUUCUCgugCuGGC-CAG- -5'
11050 3' -55.6 NC_002794.1 + 36998 0.66 0.946779
Target:  5'- gGCGAGGCGGAcccGGuAGaGCGGCuCGGg- -3'
miRNA:   3'- gUGCUUCGCCU---UC-UCgUGCUG-GCCag -5'
11050 3' -55.6 NC_002794.1 + 37325 0.75 0.516295
Target:  5'- gACGGAGCGGuGGGGCccggGCGGCagcaGGUCg -3'
miRNA:   3'- gUGCUUCGCCuUCUCG----UGCUGg---CCAG- -5'
11050 3' -55.6 NC_002794.1 + 37541 0.74 0.585076
Target:  5'- gGCGAacAGCcgccGGAGGGGcCACGACCGcGUCu -3'
miRNA:   3'- gUGCU--UCG----CCUUCUC-GUGCUGGC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.